Computational Biology and Biological Physics - Undergoing reorganization
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- 2023
-
Mark
Chemoreception of a Two-Dimensional Cell with Multilayer Diffusion
2023) FYTK02 20222(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
A Machine Learning Approach to Skin Cancer Delineation on Photoacoustic Imaging
2023) FYTM05 20231(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Hic2 overexpression increase of cell reprogramming efficiency- a computational study
2023) FYTK03 20231(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization- Bach. Degree
-
Mark
Quantification of the Performance of Algorithms for spectra Baseline Correction
2023) FYTM05 20231(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Multiple-Emitter Super-resolution Imaging using the Alternating Descent Conditional Gradient Method
2023) FYTK02 20201(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Exploring the Applications of Machine Learning in the Public Sector
2023) FYTK03 20231(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization- Bach. Degree
- 2022
-
Mark
Identification of spectral features differentiating fungal strains in infrared absorption spectroscopic images
(
- Bach. Degree
-
Mark
Computational modelling of photosynthetic excitons coupled to a microcavity
2022) FYTM03 20212(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Competition between Phase Separation and Micellization in a Coarse-Grained Protein Model with Two Components
2022) FYTM03 20212(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Evolutionary Properties of Neural Networks: Exploration of Robustness and Evolvability in the Genotype-Phenotype Map
(
- Master (Two yrs)
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Mark
Assignment of heteronuclear methyl-NMR spectrum of the 44 kDa protein MALT1 Casp-IgL3
(
- Master (Two yrs)
-
Mark
Modelling of gene regulatory and spatial mechanisms which pattern the early human neural tube
(
- Master (One yr)
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Mark
Dynamic Stopping for Artificial Neural Networks
(
- Bach. Degree
-
Mark
Folding HP Proteins on a Quantum Annealer
(
- Master (Two yrs)
-
Mark
Imputing connections of random gene networks from time series data using ANNs
(
- Master (Two yrs)
-
Mark
Optimizing L2-regularization for Binary Classification Tasks
(
- Bach. Degree
-
Mark
Accelerating MCR-ALS decomposition of hyperspectral images using k-means clustering
(
- Bach. Degree
-
Mark
Biophysical analysis of Immunotherapy and Cancer modeling
2022) FYTM03 20221(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Combining Cross-Validation and Ensemble Creation for Artificial Neural Networks
(
- Bach. Degree
-
Mark
Combined Regularisation Techniques for Artificial Neural Networks
(
- Bach. Degree
-
Mark
Energy Landscapes for Early T Cell Development
(
- Master (Two yrs)
-
Mark
Prediction of appropriate L2 regularization strengths through Bayesian formalism
2022) FYTK02 20221(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Phase behavior of mixtures of polyampholytic proteins and RNA: a toy model study
(
- Master (Two yrs)
-
Mark
Diffusion and Camera-Noise Modelling for Analysis of Single-Particle Tracking Movies
(
- Master (Two yrs)
-
Mark
Goodness-of-fit Tests for Time Dependent Ensemble Averages
2022) FYTM04 20221(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Investigating Relations between Regularization and Weight Initialization in Artificial Neural Networks
(
- Bach. Degree
-
Mark
Autoencoder outlier detection during the Covid-19 vaccination campaign
2022) FYTM03 20221(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Master (Two yrs)
- 2021
-
Mark
Application of Deep Q-learning for Vision Control on Atari Environments
(
- Master (Two yrs)
-
Mark
Data Mapping Across Compact Cellular Tissues of Varying Morphology
(
- Master (Two yrs)
-
Mark
Option Pricing using Artificial Neural Networks
(
- Bach. Degree
- 2020
-
Mark
Liquid-Liquid Phase Separation of HP Lattice Proteins: A Finite-Size Scaling Analysis
(
- Master (Two yrs)
-
Mark
PLASMID IDENTIFICATION USING DUALLY LABELLED DNA BARCODES
(
- Master (Two yrs)
-
Mark
Validation Based Cascade-Correlation Training of Artificial Neural Networks
(
- Bach. Degree
-
Mark
Training Bayesian Neural Networks
(
- Master (One yr)
-
Mark
Chromosomal DNA Barcode Assembly Using Hierarchical Clustering Matrix Method: Including Elastic Matching
2020) In LU-TP FYTK02 20201(
Computational Biology and Biological Physics - Undergoing reorganization- Bach. Degree
-
Mark
Self-adaptive random walk with pesudo-gradients for genetic evolution of an artificial neural network
(
- Master (Two yrs)
-
Mark
Occlusion method to obtain saliency maps for CNN
(
- Bach. Degree
-
Mark
Correcting biological infrared spectroscopy data for atmospheric gases and Mie scattering
(
- Master (Two yrs)
-
Mark
Childhood Habituation in Evolution of Augmenting Topologies (CHEAT)
(
- Master (Two yrs)
-
Mark
DNA damage – a novel method to measure the rate of single-stranded breaks from fragmenting dsDNA in nanochannels – theory and modeling
2020) FYTM04 20202(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Exploring Complex Langevin Dynamics Under a Simple Potential
(
- Bach. Degree
- 2019
-
Mark
Simulations of Astrocyte Induction by Transient Overexpression
2019) FYTK02 20191(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Patterning of the neural tube: A 3D computational modelling approach
2019) FYTM03 20191(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Exploration of an all-atom thermodynamic model to predict site-specific evolutionary rates in proteins
(
- Master (Two yrs)
-
Mark
Two subtypes of lung cancer classification from histopathology images based on deep learning
(
- Master (Two yrs)
-
Mark
Deep Learning techniques for classification of data with missing values
(
- Master (One yr)
-
Mark
Exploring the LASSO as a Pruning Method
(
- Bach. Degree
-
Mark
Self-Adaptive Mutation Operators for Genetic Neural Networks in Survival Analysis
2019) FYTK02 20182(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Analysing Raman spectra of crystalline cellulose degradation by fungi using artificial neural networks
2019) FYTK02 20182(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
On the Effectiveness of Handcrafted and Learned Features in Automated Essay Scoring
(
- Master (Two yrs)
-
Mark
Microarray Quality Control using Artificial Neural Networks
2019) FYTM03 20191(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
- 2018
-
Mark
Testing Direct Coupling Analysis on HP Model Proteins
2018) FYTK02 20172(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Modelling conversion of adult skin cells to neurons
2018) FYTM03 20181(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Sequence Correlations in HP Model Proteins
2018) FYTK02 20181(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Optimizing Genetic Training Parameters for Neural Networks in Survival Analysis
2018) FYTK02 20181(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Natural Language Processing in Artificial Neural Networks: Sentence analysis in medical papers
2018) FYTM04 20181(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
On the development of an unsupervised probabilistic algorithm for grayscale fluorescence image segmentation
2018) FYTK02 20181(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Hierarchical clustering matrix (HCM) method applied to DNA barcode assembly for bacterial chromosomes
2018) FYTM04 20181(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
A Conservative Discretization of a Hamiltonian System
2018) FYTK02 20181(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Identifying Cell Reprogramming Roadblocks by Modelling Induced Pluripotency with Boolean Networks and Dynamical Systems
2018) FYTM04 20181(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Exploring capsule network
2018) FYTK02 20181(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Trainable Activation Functions For Artificial Neural Networks
2018) FYTK02 20181(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
- 2017
-
Mark
Automated Tracing of Adsorbed DNA Molecules with Curvature Using B-Splines
(
- Bach. Degree
-
Mark
Macromolecular Crowding as a Determinant of Protein Viability -- a Lattice Model Study
(
- Master (Two yrs)
-
Mark
Modelling antibody orientation at bacterial surfaces
(
- Bach. Degree
-
Mark
Applying Dropout to Prevent Shallow Neural Networks from Overtraining
(
- Bach. Degree
-
Mark
Using LASSO regularization as a feature selection tool.
(
- Bach. Degree
-
Mark
Energy Landscapes for Interaction Networks: a Logic-based Approach
2017) FYTK02 20171(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Analysis of HLA-A, -B and -DR Alleles as Risk Factors for One-Year Mortality in Heart Transplants Using Artificial Neural Networks
2017) FYTM03 20171(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
- 2016
-
Mark
A comparative study of stochastic and deterministic simulation methods for transport-diffusion systems
2016) FYTM01 20151(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Contig assembly and plasmid analysis using DNA barcodes
(
- Master (Two yrs)
-
Mark
Simulation of proteins in crowded environments using coarse-graining methods
2016) PHYM01 20151(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Physics- Master (Two yrs)
-
Mark
Linking the dynamics of genetic algorithms to the encoding of information
2016) FYTK02 20161(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Training Artificial Neural Networks on the Marginal Distribution Estimates of the C index
2016) FYTK02 20161(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Gene Regulatory Networks for Cell Reprogramming - A Boolean Networks Approach
2016) FYTK02 20161(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Applying the Maxout Model to Increase the Performance of the Multilayer Perceptron in Shallow Networks
(
- Bach. Degree
- 2015
-
Mark
DERIVATION OF A REWEIGHTING ALGORITHM FOR THE PREDICTION OF THE THERMODYNAMIC STABILITY OF MUTATED SEQUENCES AND EVALUATION OF ITS USABILITY IN A SIMPLE CONTINUOUS PROTEIN MODEL
(
- Bach. Degree
-
Mark
Grand canonical study of the thermodynamics of a toy model for amyloid formation
(
- Bach. Degree
-
Mark
Spatially modelling WUSCHEL domain formation and robustness to CLAVATA3 promoter strength in the stem cell regulatory network of Arabidopsis
(
- Master (Two yrs)
-
Mark
Specificity and characteristics of fuzzy complexes -- Modelling of intrinsically disordered proteins
(
- Bach. Degree
-
Mark
Noise filtering and deconvolution of DNA barcodes
(
- Bach. Degree
- 2014
-
Mark
A model for immunotherapies against small, solid and motile tumors
2014) FYSM31 20132(
Department of Physics
Computational Biology and Biological Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Optimization of paper pulp production using Artificial Neural Networks and Simulated Annealing
(
- Bach. Degree
-
Mark
The Characteristics of Patterns in Simple Discrete Reaction-Diffusion Systems of Different Dimensionality and Number of Species
(
- Bach. Degree
-
Mark
How is the Performance of a Neural Network Ensemble influenced by Over-fitting and Ensemble Size - A Numerical Investigation
(
- Bach. Degree
-
Mark
A Multisequence Monte Carlo Method in a Simple Protein Model
(
- Bach. Degree
-
Mark
Amyloid Nucleation in Presence of Crowders
2014) FYTM02 20141(
Department of Astronomy and Theoretical Physics - Undergoing reorganization
Computational Biology and Biological Physics - Undergoing reorganization- Master (One yr)
-
Mark
Nanochannel-based DNA Barcoding for Plasmid Characterisation
2014) FYTM01 20141(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Master (Two yrs)
-
Mark
Validation of topology evolution in artificial neural networks
(
- Bach. Degree
- 2013
-
Mark
Analysing a bistable switch in systems biology with stochastic simulations
2013) FYTK01 20111(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
-
Mark
Increasing model robustness for stem cell regulation in plant shoots
(
- Bach. Degree
-
Mark
Linearisation of feed-forward artificial networks to study input importance
2013) FYTK01 20122(
Computational Biology and Biological Physics - Undergoing reorganization
Department of Astronomy and Theoretical Physics - Undergoing reorganization- Bach. Degree
- 2012
-
Mark
Describing radial patterning and leaf polarity in plants using a model of a dynamic shoot apical meristem with primordia initiation
(
- Master (Two yrs)
-
Mark
A minimalistic model for peptide fibril formation
(
- Bach. Degree
- 2011
-
Mark
Wavelet transform as signal processing method for ANN-classification of acute coronary syndrome
(
- Bach. Degree
-
Mark
Global disease transmission - What if SARS would have been more lethal?
(
- Bach. Degree
- 2010
-
Mark
Demarcating good solutions in system biology computer models using artificial neural networks
(
- Bach. Degree
-
Mark
Tracer Particle Dynamics in Heterogeneous Many-body Systems
(
- Master (Two yrs)