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Baeyer-Villiger Monooxygenases from a Dietzia sp. - Enzyme Discovery, Characterization and Engineering

Bisagni, Serena LU (2014)
Abstract (Swedish)
Popular Abstract in Undetermined

Most of the things that we use daily are the product of chemical reactions. Plastics derive from the polymerization of smaller molecules, drugs are synthesised rigorously by pharmaceutical industries, and products for the house and personal care contain a number of different chemicals and fragrances. All these compounds are produced by different branches of the chemical industry that rearranges raw material into more complex molecules.

Industrial chemical reactions can be subdivided into two categories: classical synthetic reactions and “green” biocatalysed reactions. Classic synthetic approaches often need high temperature and pressure to perform the reaction. Organic reactants are... (More)
Popular Abstract in Undetermined

Most of the things that we use daily are the product of chemical reactions. Plastics derive from the polymerization of smaller molecules, drugs are synthesised rigorously by pharmaceutical industries, and products for the house and personal care contain a number of different chemicals and fragrances. All these compounds are produced by different branches of the chemical industry that rearranges raw material into more complex molecules.

Industrial chemical reactions can be subdivided into two categories: classical synthetic reactions and “green” biocatalysed reactions. Classic synthetic approaches often need high temperature and pressure to perform the reaction. Organic reactants are often toxic and generation and maintenance of high temperature and pressure consumes a great amount of energy. In the perspective of a world in which resources are limited and pollution is a problem for mankind, it is important to improve chemical reaction processes with the aim to reduce their energy requirements and to use non-toxic reactants. For this reason biocatalysed reactions are gaining more and more importance.

Biocatalysis as the name implies use biological catalysts, often refered as enzymes, to transform the raw material into product. Enzymes are produced by microrganisms including bacteria, yeast and fungi. Unlike chemical catalysts, enzymes are biodegradable, require mild conditions (low temperature and atmospheric pressure) to catalyse reactions, they are safe and specific. This thesis work aims at developing enzymes that can be used in the future to catalyse reactions.

Baeyer-Villiger monooxygenases are enzymes which insert one oxygen atom from atmospheric air into a substrate and release water as a by-product. The classical chemical process to catalyse the same reaction requires strong oxidants, that are toxic and carry a high risk of explosion and corrosion, to catalyse the same reaction. These enzymes can be potentially used to catalyse reactions for the production of drugs, perfumes and other chemicals for various aplications such as in the production of biodegradable polymers, nylon, plastics etc.

This thesis focuses on Baeyer-Villiger monooxygenases (BVMOs) and in particular it deals with the discovery of new enzymes. Since existing BVMOs are rather unstable, meaning they lose the ability to catalyse the reaction in a short time, their application in industrial processes is hindered. Therefore there is a need for new and better industrial enzymes.

In this thesis work, four new enzymes are discovered from a bacterium called Dietzia sp. D5. One of these new BVMOs, is relatively stable compared to other enzymes of its kind and catalyses a number of reactions, including the synthesis of a precursor for the anti-inflammatory drug family of profen (the drug marketed as Ipren in Sweden).

This enzyme was also manipulated in order to produce more caprolactone, a precursor for the sysnthesis of different polymers. Mutation of the enzyme improved the production of caprolactone by 12-fold.

The work behind this thesis is just part of the global effort in moving towards a more sustainable chemical industry. It contributes by identifying a new source of oxygenase and novel BVMOs which can be potentially applied in the future to industrial processes. (Less)
Abstract
With the emergence of Green Chemistry, biocatalysis is becoming an important approach in many laboratory and industrial processes. Enzymes catalyse chemical reactions with high regio- and stereoselectivity at mild conditions and, most importantly, are able to form products that are not possible to obtain by conventional synthetic chemistry.

Monooxygenases are a fascinating group of enzymes which oxidise substrates using atmospheric oxygen and release water as a by-product. These enzymes have great potential applications and indeed there are already some industrial showcases. Monooxygenases are of different types and one of the important groups is known as Baeyer-Villiger monooxygenases (BVMOs).

BVMOs oxidise ketones to... (More)
With the emergence of Green Chemistry, biocatalysis is becoming an important approach in many laboratory and industrial processes. Enzymes catalyse chemical reactions with high regio- and stereoselectivity at mild conditions and, most importantly, are able to form products that are not possible to obtain by conventional synthetic chemistry.

Monooxygenases are a fascinating group of enzymes which oxidise substrates using atmospheric oxygen and release water as a by-product. These enzymes have great potential applications and indeed there are already some industrial showcases. Monooxygenases are of different types and one of the important groups is known as Baeyer-Villiger monooxygenases (BVMOs).

BVMOs oxidise ketones to esters and heteroatoms to the corresponding oxide, which are intersting reactions for pharmaceutical and fine chemical industry. To date, several BVMOs have been discovered and characterised; however, there are many limitations, such as poor stability which hindered the wide application of these enzymes. Thus, the search for better BVMOs has continued.

This thesis reports the discovery of four BVMOs from the genome sequence of

Dietzia sp. D5, a microorganism rich in oxygenases. The genes were cloned and expressed, and two of them were characterised. One of the enzymes, named BVMO3 readily oxidises linear aliphatic ketones. Characterization of the other BVMO, called BVMO4, revealed that it is the second most stable native BVMO ever reported and it oxidises a wide range of substrates. The oxidation of sulfides and aldehydes has been investigated further. Aldehydes were oxidised by this BVMO with a rare regioselectivity, producing carboxylic acid rather than formate ester which is the commonly observed product. Site saturation mutagenesis of selected amino acid residues in the proximity of the active site increased the cyclohexanone oxidation efficiency of BVMO4 by twelve-fold. (Less)
Please use this url to cite or link to this publication:
author
supervisor
opponent
  • Professor Fraaije, Marco, University of Groningen (The Netherlands)
organization
publishing date
type
Thesis
publication status
published
subject
keywords
Dietzia, Baeyer-Villiger monooxygenases, biocatalysis, enzyme
pages
189 pages
publisher
Division of Biotechnology, Lund University
defense location
Lecture hall B, Kemicentrum, Getingevägen 60, Lund Universtity Faculty of Engineering, Lund
defense date
2014-10-24 13:15
language
English
LU publication?
yes
id
d1a0fa34-565a-41cd-a7ed-63f6a3753f1e (old id 4689925)
date added to LUP
2014-09-30 07:32:36
date last changed
2016-09-19 08:45:15
@misc{d1a0fa34-565a-41cd-a7ed-63f6a3753f1e,
  abstract     = {With the emergence of Green Chemistry, biocatalysis is becoming an important approach in many laboratory and industrial processes. Enzymes catalyse chemical reactions with high regio- and stereoselectivity at mild conditions and, most importantly, are able to form products that are not possible to obtain by conventional synthetic chemistry.<br/><br>
Monooxygenases are a fascinating group of enzymes which oxidise substrates using atmospheric oxygen and release water as a by-product. These enzymes have great potential applications and indeed there are already some industrial showcases. Monooxygenases are of different types and one of the important groups is known as Baeyer-Villiger monooxygenases (BVMOs).<br/><br>
BVMOs oxidise ketones to esters and heteroatoms to the corresponding oxide, which are intersting reactions for pharmaceutical and fine chemical industry. To date, several BVMOs have been discovered and characterised; however, there are many limitations, such as poor stability which hindered the wide application of these enzymes. Thus, the search for better BVMOs has continued.<br/><br>
This thesis reports the discovery of four BVMOs from the genome sequence of<br/><br>
Dietzia sp. D5, a microorganism rich in oxygenases. The genes were cloned and expressed, and two of them were characterised. One of the enzymes, named BVMO3 readily oxidises linear aliphatic ketones. Characterization of the other BVMO, called BVMO4, revealed that it is the second most stable native BVMO ever reported and it oxidises a wide range of substrates. The oxidation of sulfides and aldehydes has been investigated further. Aldehydes were oxidised by this BVMO with a rare regioselectivity, producing carboxylic acid rather than formate ester which is the commonly observed product. Site saturation mutagenesis of selected amino acid residues in the proximity of the active site increased the cyclohexanone oxidation efficiency of BVMO4 by twelve-fold.},
  author       = {Bisagni, Serena},
  keyword      = {Dietzia,Baeyer-Villiger monooxygenases,biocatalysis,enzyme},
  language     = {eng},
  pages        = {189},
  publisher    = {ARRAY(0xaf41818)},
  title        = {Baeyer-Villiger Monooxygenases from a Dietzia sp. - Enzyme Discovery, Characterization and Engineering},
  year         = {2014},
}