mzML - a community standard for mass Spectrometry data
(2011) In Molecular & Cellular Proteomics 10(1). p.1-000133- Abstract
- Mass spectrometry is a fundamental tool for discovery and analysis in the life sciences. With the rapid advances in mass spectrometry technology and methods, it has become imperative to provide a standard output format for mass spectrometry data that will facilitate data sharing and analysis. Initially, the efforts to develop a standard format for mass spectrometry data resulted in multiple formats, each designed with a different underlying philosophy. To resolve the issues associated with having multiple formats, vendors, researchers, and software developers convened under the banner of the HUPO PSI to develop a single standard. The new data format incorporated many of the desirable technical attributes from the previous data formats,... (More)
- Mass spectrometry is a fundamental tool for discovery and analysis in the life sciences. With the rapid advances in mass spectrometry technology and methods, it has become imperative to provide a standard output format for mass spectrometry data that will facilitate data sharing and analysis. Initially, the efforts to develop a standard format for mass spectrometry data resulted in multiple formats, each designed with a different underlying philosophy. To resolve the issues associated with having multiple formats, vendors, researchers, and software developers convened under the banner of the HUPO PSI to develop a single standard. The new data format incorporated many of the desirable technical attributes from the previous data formats, while adding a number of improvements, including features such as a controlled vocabulary with validation tools to ensure consistent usage of the format, improved support for selected reaction monitoring data, and immediately available implementations to facilitate rapid adoption by the community. The resulting standard data format, mzML, is a well tested open-source format for mass spectrometer output files that can be readily utilized by the community and easily adapted for incremental advances in mass spectrometry technology. (Less)
Please use this url to cite or link to this publication:
https://lup.lub.lu.se/record/1658916
- author
- Martens, Lennart ; Chambers, Matthew ; Sturm, Marc ; Kessner, Darren ; Levander, Fredrik LU and Shofstahl, Jim
- organization
- publishing date
- 2011
- type
- Contribution to journal
- publication status
- published
- subject
- in
- Molecular & Cellular Proteomics
- volume
- 10
- issue
- 1
- pages
- 1 - 000133
- publisher
- American Society for Biochemistry and Molecular Biology
- external identifiers
-
- wos:000286928400023
- scopus:78651082595
- pmid:20716697
- ISSN
- 1535-9484
- DOI
- 10.1074/mcp.R110.000133
- language
- English
- LU publication?
- yes
- id
- 3f371627-020f-4d3c-aae0-877495f31501 (old id 1658916)
- date added to LUP
- 2016-04-04 07:13:45
- date last changed
- 2022-04-23 07:51:50
@article{3f371627-020f-4d3c-aae0-877495f31501,
abstract = {{Mass spectrometry is a fundamental tool for discovery and analysis in the life sciences. With the rapid advances in mass spectrometry technology and methods, it has become imperative to provide a standard output format for mass spectrometry data that will facilitate data sharing and analysis. Initially, the efforts to develop a standard format for mass spectrometry data resulted in multiple formats, each designed with a different underlying philosophy. To resolve the issues associated with having multiple formats, vendors, researchers, and software developers convened under the banner of the HUPO PSI to develop a single standard. The new data format incorporated many of the desirable technical attributes from the previous data formats, while adding a number of improvements, including features such as a controlled vocabulary with validation tools to ensure consistent usage of the format, improved support for selected reaction monitoring data, and immediately available implementations to facilitate rapid adoption by the community. The resulting standard data format, mzML, is a well tested open-source format for mass spectrometer output files that can be readily utilized by the community and easily adapted for incremental advances in mass spectrometry technology.}},
author = {{Martens, Lennart and Chambers, Matthew and Sturm, Marc and Kessner, Darren and Levander, Fredrik and Shofstahl, Jim}},
issn = {{1535-9484}},
language = {{eng}},
number = {{1}},
pages = {{1--000133}},
publisher = {{American Society for Biochemistry and Molecular Biology}},
series = {{Molecular & Cellular Proteomics}},
title = {{mzML - a community standard for mass Spectrometry data}},
url = {{http://dx.doi.org/10.1074/mcp.R110.000133}},
doi = {{10.1074/mcp.R110.000133}},
volume = {{10}},
year = {{2011}},
}