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Animal snoRNAs and scaRNAs with exceptional structures

Marz, Manja; Gruber, Andreas R.; Siederdissen, Christian Hoener Zu; Amman, Fabian; Badelt, Stefan; Bartschat, Sebastian; Bernhart, Stephan H.; Beyer, Wolfgang; Kehr, Stephanie and Lorenz, Ronny, et al. (2011) In RNA Biology 8(6). p.938-946
Abstract
The overwhelming majority of small nucleolar RNAs (snoRNAs) fall into two clearly defined classes characterized by distinctive secondary structures and sequence motifs. A small group of diverse ncRNAs, however, shares the hallmarks of one or both classes of snoRNAs but differs substantially from the norm in some respects. Here, we compile the available information on these exceptional cases, conduct a thorough homology search throughout the available metazoan genomes, provide improved and expanded alignments, and investigate the evolutionary histories of these ncRNA families as well as their mutual relationships.
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organization
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Contribution to journal
publication status
published
subject
keywords
box C/D, boxH/ACA, scaRNA, evolution, secondary structure
in
RNA Biology
volume
8
issue
6
pages
938 - 946
publisher
Taylor & Francis
external identifiers
  • wos:000298630600001
  • scopus:84860844588
ISSN
1547-6286
DOI
10.4161/rna.8.6.16603
language
English
LU publication?
yes
id
217df2fa-f367-42d5-b7ed-43e247b597e5 (old id 2307053)
date added to LUP
2012-02-07 10:05:36
date last changed
2017-03-12 03:07:29
@article{217df2fa-f367-42d5-b7ed-43e247b597e5,
  abstract     = {The overwhelming majority of small nucleolar RNAs (snoRNAs) fall into two clearly defined classes characterized by distinctive secondary structures and sequence motifs. A small group of diverse ncRNAs, however, shares the hallmarks of one or both classes of snoRNAs but differs substantially from the norm in some respects. Here, we compile the available information on these exceptional cases, conduct a thorough homology search throughout the available metazoan genomes, provide improved and expanded alignments, and investigate the evolutionary histories of these ncRNA families as well as their mutual relationships.},
  author       = {Marz, Manja and Gruber, Andreas R. and Siederdissen, Christian Hoener Zu and Amman, Fabian and Badelt, Stefan and Bartschat, Sebastian and Bernhart, Stephan H. and Beyer, Wolfgang and Kehr, Stephanie and Lorenz, Ronny and Tanzer, Andrea and Yusuf, Dilmurat and Tafer, Hakim and Hofacker, Ivo L. and Stadler, Peter F.},
  issn         = {1547-6286},
  keyword      = {box C/D,boxH/ACA,scaRNA,evolution,secondary structure},
  language     = {eng},
  number       = {6},
  pages        = {938--946},
  publisher    = {Taylor & Francis},
  series       = {RNA Biology},
  title        = {Animal snoRNAs and scaRNAs with exceptional structures},
  url          = {http://dx.doi.org/10.4161/rna.8.6.16603},
  volume       = {8},
  year         = {2011},
}