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Sharing data between LSDBs and central repositories.

den Dunnen, Johan T; Sijmons, Rolf H; Andersen, Paal S; Vihinen, Mauno LU ; Beckmann, Jacques S; Rossetti, Sandro; Talbot, C Conover; Hardison, Ross C; Povey, Sue and Cotton, Richard G H (2009) In Human Mutation 30(4). p.493-495
Abstract
Several Locus-Specific DataBases (LSDBs) have recently been approached by larger, more general data repositories (including NCBI and UCSC) with the request to share the DNA variant data they have collected. Within the Human Genome Variation Society (HGVS) a document was generated summarizing the issues related to these requests. The document has been circulated in the HGVS/LSDB community and was discussed extensively. Here we summarize these discussions and present the concluded recommendations for LSDB data sharing with central repositories.
Please use this url to cite or link to this publication:
author
publishing date
type
Contribution to journal
publication status
published
subject
keywords
Computational Biology: methods, Computational Biology: standards, Genome, Human: genetics
in
Human Mutation
volume
30
issue
4
pages
493 - 495
publisher
John Wiley & Sons
external identifiers
  • pmid:19306393
  • scopus:63749128507
ISSN
1059-7794
DOI
10.1002/humu.20977
language
English
LU publication?
no
id
61a6a04c-8310-4b70-ab78-13dc3312ba89 (old id 3634927)
alternative location
http://www.ncbi.nlm.nih.gov/pubmed/19306393?dopt=Abstract
date added to LUP
2013-06-12 20:34:42
date last changed
2017-05-14 04:22:20
@article{61a6a04c-8310-4b70-ab78-13dc3312ba89,
  abstract     = {Several Locus-Specific DataBases (LSDBs) have recently been approached by larger, more general data repositories (including NCBI and UCSC) with the request to share the DNA variant data they have collected. Within the Human Genome Variation Society (HGVS) a document was generated summarizing the issues related to these requests. The document has been circulated in the HGVS/LSDB community and was discussed extensively. Here we summarize these discussions and present the concluded recommendations for LSDB data sharing with central repositories.},
  author       = {den Dunnen, Johan T and Sijmons, Rolf H and Andersen, Paal S and Vihinen, Mauno and Beckmann, Jacques S and Rossetti, Sandro and Talbot, C Conover and Hardison, Ross C and Povey, Sue and Cotton, Richard G H},
  issn         = {1059-7794},
  keyword      = {Computational Biology: methods,Computational Biology: standards,Genome,Human: genetics},
  language     = {eng},
  number       = {4},
  pages        = {493--495},
  publisher    = {John Wiley & Sons},
  series       = {Human Mutation},
  title        = {Sharing data between LSDBs and central repositories.},
  url          = {http://dx.doi.org/10.1002/humu.20977},
  volume       = {30},
  year         = {2009},
}