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REPRESENTATIVE SELECTION OF PROTEINS BASED ON NUCLEAR FAMILIES

BOBERG, J; SALAKOSKI, T and Vihinen, Mauno LU (1995) In Protein Engineering 8(5). p.501-503
Abstract
The selection of unbiased representatives from a large database is complicated by the requirement for the chosen entries to be not only genuinely different from each other but also typical for the family of related entries. A method satisfying this 2-fold objective was developed by equipping complete linkage clustering with a novel noise elimination procedure to deal with overlapping cluster structure, A total of 200 nuclear families of truly related Brookhaven Protein Data Bank structures were generated, from which any entry can be chosen to represent its family.
Please use this url to cite or link to this publication:
author
publishing date
type
Contribution to journal
publication status
published
subject
keywords
COMPLETE LINKAGE CLUSTERING, NOISE ELIMINATION, PDB FAMILIES, REPRESENTATIVE SELECTION
in
Protein Engineering
volume
8
issue
5
pages
501 - 503
publisher
Oxford University Press
external identifiers
  • wos:A1995RN59100013
  • scopus:0029129582
ISSN
1460-213X
DOI
10.1093/protein/8.5.501
language
English
LU publication?
no
id
05c86726-06be-4f4f-8e67-ce57a18cbd73 (old id 3853212)
date added to LUP
2013-06-28 14:38:02
date last changed
2017-01-01 04:32:54
@article{05c86726-06be-4f4f-8e67-ce57a18cbd73,
  abstract     = {The selection of unbiased representatives from a large database is complicated by the requirement for the chosen entries to be not only genuinely different from each other but also typical for the family of related entries. A method satisfying this 2-fold objective was developed by equipping complete linkage clustering with a novel noise elimination procedure to deal with overlapping cluster structure, A total of 200 nuclear families of truly related Brookhaven Protein Data Bank structures were generated, from which any entry can be chosen to represent its family.},
  author       = {BOBERG, J and SALAKOSKI, T and Vihinen, Mauno},
  issn         = {1460-213X},
  keyword      = {COMPLETE LINKAGE CLUSTERING,NOISE ELIMINATION,PDB FAMILIES,REPRESENTATIVE SELECTION},
  language     = {eng},
  number       = {5},
  pages        = {501--503},
  publisher    = {Oxford University Press},
  series       = {Protein Engineering},
  title        = {REPRESENTATIVE SELECTION OF PROTEINS BASED ON NUCLEAR FAMILIES},
  url          = {http://dx.doi.org/10.1093/protein/8.5.501},
  volume       = {8},
  year         = {1995},
}