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DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.

Teleman, Johan LU ; Röst, Hannes ; Rosenberger, George ; Schmitt, Uwe ; Malmström, Lars ; Malmström, Johan LU orcid and Levander, Fredrik LU orcid (2015) In Bioinformatics 31(4). p.555-562
Abstract
Data independent acquisition mass spectrometry has emerged as a reproducible and sensitive alternative in quantitative proteomics, where parsing the highly complex tandem mass spectra requires dedicated algorithms. Recently, targeted data extraction was proposed as a novel analysis strategy for this type of data, but it is important to further develop these concepts to provide quality-controlled, interference-adjusted and sensitive peptide quantification.
Please use this url to cite or link to this publication:
author
; ; ; ; ; and
organization
publishing date
type
Contribution to journal
publication status
published
subject
in
Bioinformatics
volume
31
issue
4
pages
555 - 562
publisher
Oxford University Press
external identifiers
  • pmid:25348213
  • wos:000350059600013
  • scopus:84928999619
  • pmid:25348213
ISSN
1367-4803
DOI
10.1093/bioinformatics/btu686
language
English
LU publication?
yes
id
038e61a8-4f79-4b84-a4a6-abecc72e36d8 (old id 4733189)
alternative location
http://www.ncbi.nlm.nih.gov/pubmed/25348213?dopt=Abstract
date added to LUP
2016-04-01 10:51:55
date last changed
2024-07-29 07:33:06
@article{038e61a8-4f79-4b84-a4a6-abecc72e36d8,
  abstract     = {{Data independent acquisition mass spectrometry has emerged as a reproducible and sensitive alternative in quantitative proteomics, where parsing the highly complex tandem mass spectra requires dedicated algorithms. Recently, targeted data extraction was proposed as a novel analysis strategy for this type of data, but it is important to further develop these concepts to provide quality-controlled, interference-adjusted and sensitive peptide quantification.}},
  author       = {{Teleman, Johan and Röst, Hannes and Rosenberger, George and Schmitt, Uwe and Malmström, Lars and Malmström, Johan and Levander, Fredrik}},
  issn         = {{1367-4803}},
  language     = {{eng}},
  number       = {{4}},
  pages        = {{555--562}},
  publisher    = {{Oxford University Press}},
  series       = {{Bioinformatics}},
  title        = {{DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.}},
  url          = {{https://lup.lub.lu.se/search/files/2197385/7758682.pdf}},
  doi          = {{10.1093/bioinformatics/btu686}},
  volume       = {{31}},
  year         = {{2015}},
}