Skip to main content

Lund University Publications

LUND UNIVERSITY LIBRARIES

Prospects for single-molecule electrostatic detection in molecular motor gliding motility assays

Miranda, M. Sanchez ; Lyttleton, R. LU ; Siu, P. H. ; Diez, S. ; Linke, H. LU orcid and Micolich, A. P. (2021) In New Journal of Physics 23(6).
Abstract

Molecular motor gliding motility assays based on myosin/actin or kinesin/microtubules are of interest for nanotechnology applications ranging from cargo-trafficking in lab-on-a-chip devices to novel biocomputation strategies. Prototype systems are typically monitored by expensive and bulky fluorescence microscopy systems. The development of integrated, direct electric detection of single filaments would strongly benefit applications and scale-up. We present estimates for the viability of such a detector by calculating the electrostatic potential change generated at a carbon nanotube transistor by a motile actin filament or microtubule under realistic gliding assay conditions. We combine this with detection limits based on previous... (More)

Molecular motor gliding motility assays based on myosin/actin or kinesin/microtubules are of interest for nanotechnology applications ranging from cargo-trafficking in lab-on-a-chip devices to novel biocomputation strategies. Prototype systems are typically monitored by expensive and bulky fluorescence microscopy systems. The development of integrated, direct electric detection of single filaments would strongly benefit applications and scale-up. We present estimates for the viability of such a detector by calculating the electrostatic potential change generated at a carbon nanotube transistor by a motile actin filament or microtubule under realistic gliding assay conditions. We combine this with detection limits based on previous state-of-the-art experiments using carbon nanotube transistors to detect catalysis by a bound lysozyme molecule and melting of a bound short-strand DNA molecule. Our results show that detection should be possible for both actin and microtubules using existing low ionic strength buffers given good device design, e.g., by raising the transistor slightly above the guiding channel floor. We perform studies as a function of buffer ionic strength, height of the transistor above the guiding channel floor, presence/absence of the casein surface passivation layer for microtubule assays and the linear charge density of the actin filaments/microtubules. We show that detection of microtubules is a more likely prospect given their smaller height of travel above the surface, higher negative charge density and the casein passivation, and may possibly be achieved with the nanoscale transistor sitting directly on the guiding channel floor.

(Less)
Please use this url to cite or link to this publication:
author
; ; ; ; and
organization
publishing date
type
Contribution to journal
publication status
published
subject
keywords
electrostatic detection, molecular motor, nanoscale biosensors
in
New Journal of Physics
volume
23
issue
6
article number
065003
publisher
IOP Publishing
external identifiers
  • scopus:85108022038
ISSN
1367-2630
DOI
10.1088/1367-2630/abfdf5
language
English
LU publication?
yes
id
50d48481-64e9-4850-b40a-11c739b5ac4f
date added to LUP
2021-07-16 11:26:21
date last changed
2023-11-08 16:30:44
@article{50d48481-64e9-4850-b40a-11c739b5ac4f,
  abstract     = {{<p>Molecular motor gliding motility assays based on myosin/actin or kinesin/microtubules are of interest for nanotechnology applications ranging from cargo-trafficking in lab-on-a-chip devices to novel biocomputation strategies. Prototype systems are typically monitored by expensive and bulky fluorescence microscopy systems. The development of integrated, direct electric detection of single filaments would strongly benefit applications and scale-up. We present estimates for the viability of such a detector by calculating the electrostatic potential change generated at a carbon nanotube transistor by a motile actin filament or microtubule under realistic gliding assay conditions. We combine this with detection limits based on previous state-of-the-art experiments using carbon nanotube transistors to detect catalysis by a bound lysozyme molecule and melting of a bound short-strand DNA molecule. Our results show that detection should be possible for both actin and microtubules using existing low ionic strength buffers given good device design, e.g., by raising the transistor slightly above the guiding channel floor. We perform studies as a function of buffer ionic strength, height of the transistor above the guiding channel floor, presence/absence of the casein surface passivation layer for microtubule assays and the linear charge density of the actin filaments/microtubules. We show that detection of microtubules is a more likely prospect given their smaller height of travel above the surface, higher negative charge density and the casein passivation, and may possibly be achieved with the nanoscale transistor sitting directly on the guiding channel floor. </p>}},
  author       = {{Miranda, M. Sanchez and Lyttleton, R. and Siu, P. H. and Diez, S. and Linke, H. and Micolich, A. P.}},
  issn         = {{1367-2630}},
  keywords     = {{electrostatic detection; molecular motor; nanoscale biosensors}},
  language     = {{eng}},
  number       = {{6}},
  publisher    = {{IOP Publishing}},
  series       = {{New Journal of Physics}},
  title        = {{Prospects for single-molecule electrostatic detection in molecular motor gliding motility assays}},
  url          = {{http://dx.doi.org/10.1088/1367-2630/abfdf5}},
  doi          = {{10.1088/1367-2630/abfdf5}},
  volume       = {{23}},
  year         = {{2021}},
}