RankViaContact: ranking and visualization of amino acid contacts.
Shen, Bairong and Vihinen, Mauno LU
(2003)
In Bioinformatics
19(16).
p.2161-2162
- Abstract
- SUMMARY: RankViaContact is a web service for calculation of residue-residue contact energies in proteins based on a coarse-grained model, and for visualization of interactions. The service provides information about ranked contact energies of residues, coordination numbers and the relative solvent accessibility of selected residues, as well as sequence and structure information. The program can be used to design stabilizing mutations, to analyze residue-residue contacts and to study the consequences of mutations. AVAILABILITY: http://bioinf.uta.fi/Rank.htm.
Please use this url to cite or link to this publication:
https://lup.lub.lu.se/record/3635548
- author
- Shen, Bairong
and Vihinen, Mauno
LU
- publishing date
- 2003
- type
- Contribution to journal
- publication status
- published
- subject
- keywords
- Amino Acids: chemistry, Amino Acids: classification, Proteins: chemistry, Proteins: classification
- in
- Bioinformatics
- volume
- 19
- issue
- 16
- pages
- 2161 - 2162
- publisher
- Oxford University Press
- external identifiers
-
- pmid:14594727
- scopus:0242391985
- ISSN
- 1367-4803
- language
- English
- LU publication?
- no
- id
- 5e7492ee-4f6e-4cd1-a7d4-452d3c8f4cd6 (old id 3635548)
- alternative location
- http://www.ncbi.nlm.nih.gov/pubmed/14594727?dopt=Abstract
- date added to LUP
- 2016-04-04 07:44:04
- date last changed
- 2022-03-07 20:41:04
@article{5e7492ee-4f6e-4cd1-a7d4-452d3c8f4cd6,
abstract = {{SUMMARY: RankViaContact is a web service for calculation of residue-residue contact energies in proteins based on a coarse-grained model, and for visualization of interactions. The service provides information about ranked contact energies of residues, coordination numbers and the relative solvent accessibility of selected residues, as well as sequence and structure information. The program can be used to design stabilizing mutations, to analyze residue-residue contacts and to study the consequences of mutations. AVAILABILITY: http://bioinf.uta.fi/Rank.htm.}},
author = {{Shen, Bairong and Vihinen, Mauno}},
issn = {{1367-4803}},
keywords = {{Amino Acids: chemistry; Amino Acids: classification; Proteins: chemistry; Proteins: classification}},
language = {{eng}},
number = {{16}},
pages = {{2161--2162}},
publisher = {{Oxford University Press}},
series = {{Bioinformatics}},
title = {{RankViaContact: ranking and visualization of amino acid contacts.}},
url = {{http://www.ncbi.nlm.nih.gov/pubmed/14594727?dopt=Abstract}},
volume = {{19}},
year = {{2003}},
}