The Gluopsins : Opsins without the Retinal Binding Lysine
(2022) In Cells 11(15).- Abstract
Opsins allow us to see. They are G-protein-coupled receptors and bind as ligand retinal, which is bound covalently to a lysine in the seventh transmembrane domain. This makes opsins light-sensitive. The lysine is so conserved that it is used to define a sequence as an opsin and thus phylogenetic opsin reconstructions discard any sequence without it. However, recently, opsins were found that function not only as photoreceptors but also as chemoreceptors. For chemoreception, the lysine is not needed. Therefore, we wondered: Do opsins exists that have lost this lysine during evolution? To find such opsins, we built an automatic pipeline for reconstructing a large-scale opsin phylogeny. The pipeline compiles and aligns sequences from public... (More)
Opsins allow us to see. They are G-protein-coupled receptors and bind as ligand retinal, which is bound covalently to a lysine in the seventh transmembrane domain. This makes opsins light-sensitive. The lysine is so conserved that it is used to define a sequence as an opsin and thus phylogenetic opsin reconstructions discard any sequence without it. However, recently, opsins were found that function not only as photoreceptors but also as chemoreceptors. For chemoreception, the lysine is not needed. Therefore, we wondered: Do opsins exists that have lost this lysine during evolution? To find such opsins, we built an automatic pipeline for reconstructing a large-scale opsin phylogeny. The pipeline compiles and aligns sequences from public sources, reconstructs the phylogeny, prunes rogue sequences, and visualizes the resulting tree. Our final opsin phylogeny is the largest to date with 4956 opsins. Among them is a clade of 33 opsins that have the lysine replaced by glutamic acid. Thus, we call them gluopsins. The gluopsins are mainly dragonfly and butterfly opsins, closely related to the RGR-opsins and the retinochromes. Like those, they have a derived NPxxY motif. However, what their particular function is, remains to be seen.
(Less)
- author
- Gühmann, Martin ; Porter, Megan L. and Bok, Michael J. LU
- organization
- publishing date
- 2022
- type
- Contribution to journal
- publication status
- published
- subject
- keywords
- chemoreceptor, data mining, evolution, G-protein-coupled receptor, opsin, photoisomerase, phylogeny, retinal binding site
- in
- Cells
- volume
- 11
- issue
- 15
- article number
- 2441
- publisher
- MDPI AG
- external identifiers
-
- scopus:85136341270
- pmid:35954284
- ISSN
- 2073-4409
- DOI
- 10.3390/cells11152441
- language
- English
- LU publication?
- yes
- id
- 739bf2f8-974b-4ff9-813b-a69808fd32f0
- date added to LUP
- 2022-09-08 14:21:25
- date last changed
- 2024-06-10 10:10:21
@article{739bf2f8-974b-4ff9-813b-a69808fd32f0,
abstract = {{<p>Opsins allow us to see. They are G-protein-coupled receptors and bind as ligand retinal, which is bound covalently to a lysine in the seventh transmembrane domain. This makes opsins light-sensitive. The lysine is so conserved that it is used to define a sequence as an opsin and thus phylogenetic opsin reconstructions discard any sequence without it. However, recently, opsins were found that function not only as photoreceptors but also as chemoreceptors. For chemoreception, the lysine is not needed. Therefore, we wondered: Do opsins exists that have lost this lysine during evolution? To find such opsins, we built an automatic pipeline for reconstructing a large-scale opsin phylogeny. The pipeline compiles and aligns sequences from public sources, reconstructs the phylogeny, prunes rogue sequences, and visualizes the resulting tree. Our final opsin phylogeny is the largest to date with 4956 opsins. Among them is a clade of 33 opsins that have the lysine replaced by glutamic acid. Thus, we call them gluopsins. The gluopsins are mainly dragonfly and butterfly opsins, closely related to the RGR-opsins and the retinochromes. Like those, they have a derived NPxxY motif. However, what their particular function is, remains to be seen.</p>}},
author = {{Gühmann, Martin and Porter, Megan L. and Bok, Michael J.}},
issn = {{2073-4409}},
keywords = {{chemoreceptor; data mining; evolution; G-protein-coupled receptor; opsin; photoisomerase; phylogeny; retinal binding site}},
language = {{eng}},
number = {{15}},
publisher = {{MDPI AG}},
series = {{Cells}},
title = {{The Gluopsins : Opsins without the Retinal Binding Lysine}},
url = {{http://dx.doi.org/10.3390/cells11152441}},
doi = {{10.3390/cells11152441}},
volume = {{11}},
year = {{2022}},
}