Molecular docking analysis of ahl molecule on plant protein arr10
Basu, Anamika and Sarkar, Anasua LU
(2015)
2nd International Conference on Information Systems Design and Intelligent Applications, INDIA 2015
In Advances in Intelligent Systems and Computing
340.
p.187-193
- Abstract
In rhizosphere Plant Growth Promoting Rhizobacteria (PGPR) produce N-acyl-l-homoserine lactones (AHL) as the quorum-sensing (QS) signals. AHLs can act as trans-kingdom signalling molecules between plants and rhizobacteria and that can regulate plant growth and development. The plant-beneficial PGPR Burkholderia phytofirmans PsJN promotes growth in Arabidopsis thaliana by producing 3-oxo-dodecanoyl homoserine lactone (oxo-C14-HSL) from their quorum-sensing (QS) system. In bacteria, QS system functions by binding AHL to the LuxR-family of sensor/regulator proteins through their response regulator receiver domain. It has been hypothesized that by using similar response domain, Arabidopsis response regulator 10 (ARR10) proteins may act as... (More)
In rhizosphere Plant Growth Promoting Rhizobacteria (PGPR) produce N-acyl-l-homoserine lactones (AHL) as the quorum-sensing (QS) signals. AHLs can act as trans-kingdom signalling molecules between plants and rhizobacteria and that can regulate plant growth and development. The plant-beneficial PGPR Burkholderia phytofirmans PsJN promotes growth in Arabidopsis thaliana by producing 3-oxo-dodecanoyl homoserine lactone (oxo-C14-HSL) from their quorum-sensing (QS) system. In bacteria, QS system functions by binding AHL to the LuxR-family of sensor/regulator proteins through their response regulator receiver domain. It has been hypothesized that by using similar response domain, Arabidopsis response regulator 10 (ARR10) proteins may act as binding site for 3-oxo-dodecanoyl homoserine lactone. ARRs are involved in cytokinin signalling pathways and thus these types of lactones can regulate growth in Arabidopsis. We prove the binding of oxo-C14-HSL with ARR10 by using molecular docking technique and analysing the docking result.
(Less)
- author
- Basu, Anamika
and Sarkar, Anasua
LU
- publishing date
- 2015-01-01
- type
- Chapter in Book/Report/Conference proceeding
- publication status
- published
- keywords
- 3-oxo-C14-Homo serine lactones, Arabidopsis response regulator 10 (ARR10) proteins, Burkholderia phytofirmans PsJN, Molecular docking, N-acyl-l-homoserine lactones, Plant growth promoting rhizobacteria, Response regulator receiver domain
- host publication
- Information Systems Design and Intelligent Applications - Proceedings of 2nd International Conference, INDIA 2015
- series title
- Advances in Intelligent Systems and Computing
- editor
- Mandal, J.K. ; Satapathy, Suresh Chandra ; Sanyal, Manas Kumar ; Sarkar, Partha Pratim and Mukhopadhyay, Anirban
- volume
- 340
- pages
- 187 - 193
- publisher
- Springer
- conference name
- 2nd International Conference on Information Systems Design and Intelligent Applications, INDIA 2015
- conference location
- Kalyani, India
- conference dates
- 2015-01-08 - 2015-01-09
- external identifiers
-
- scopus:84921942597
- ISSN
- 2194-5357
- ISBN
- 9788132222460
- DOI
- 10.1007/978-81-322-2247-7_20
- language
- English
- LU publication?
- no
- id
- 91da6867-9974-4a75-ac43-6c838ca57eed
- date added to LUP
- 2018-10-09 09:49:36
- date last changed
- 2022-01-31 05:53:01
@inproceedings{91da6867-9974-4a75-ac43-6c838ca57eed,
abstract = {{<p>In rhizosphere Plant Growth Promoting Rhizobacteria (PGPR) produce N-acyl-l-homoserine lactones (AHL) as the quorum-sensing (QS) signals. AHLs can act as trans-kingdom signalling molecules between plants and rhizobacteria and that can regulate plant growth and development. The plant-beneficial PGPR Burkholderia phytofirmans PsJN promotes growth in Arabidopsis thaliana by producing 3-oxo-dodecanoyl homoserine lactone (oxo-C14-HSL) from their quorum-sensing (QS) system. In bacteria, QS system functions by binding AHL to the LuxR-family of sensor/regulator proteins through their response regulator receiver domain. It has been hypothesized that by using similar response domain, Arabidopsis response regulator 10 (ARR10) proteins may act as binding site for 3-oxo-dodecanoyl homoserine lactone. ARRs are involved in cytokinin signalling pathways and thus these types of lactones can regulate growth in Arabidopsis. We prove the binding of oxo-C14-HSL with ARR10 by using molecular docking technique and analysing the docking result.</p>}},
author = {{Basu, Anamika and Sarkar, Anasua}},
booktitle = {{Information Systems Design and Intelligent Applications - Proceedings of 2nd International Conference, INDIA 2015}},
editor = {{Mandal, J.K. and Satapathy, Suresh Chandra and Sanyal, Manas Kumar and Sarkar, Partha Pratim and Mukhopadhyay, Anirban}},
isbn = {{9788132222460}},
issn = {{2194-5357}},
keywords = {{3-oxo-C14-Homo serine lactones; Arabidopsis response regulator 10 (ARR10) proteins; Burkholderia phytofirmans PsJN; Molecular docking; N-acyl-l-homoserine lactones; Plant growth promoting rhizobacteria; Response regulator receiver domain}},
language = {{eng}},
month = {{01}},
pages = {{187--193}},
publisher = {{Springer}},
series = {{Advances in Intelligent Systems and Computing}},
title = {{Molecular docking analysis of ahl molecule on plant protein arr10}},
url = {{http://dx.doi.org/10.1007/978-81-322-2247-7_20}},
doi = {{10.1007/978-81-322-2247-7_20}},
volume = {{340}},
year = {{2015}},
}