Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020
(2020) In Eurosurveillance 25(32).- Abstract
We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.
Please use this url to cite or link to this publication:
https://lup.lub.lu.se/record/ba8eb567-5d1a-4729-b3bc-cd730a9c13c1
- author
- Alm, Erik ; Broberg, Eeva K ; Connor, Thomas ; Hodcroft, Emma B ; Komissarov, Andrey B ; Maurer-Stroh, Sebastian ; Melidou, Angeliki ; Neher, Richard A ; O'Toole, Áine and Pereyaslov, Dmitriy
- contributor
- Balcazar Lopez, Carlos Enrique LU
- author collaboration
- publishing date
- 2020-08
- type
- Contribution to journal
- publication status
- published
- subject
- keywords
- Base Sequence, Betacoronavirus/genetics, COVID-19, Coronavirus/genetics, Coronavirus Infections/epidemiology, Europe/epidemiology, Genome, Viral/genetics, Humans, Pandemics, Phylogeography, Pneumonia, Viral/epidemiology, RNA, Viral/analysis, RNA-Dependent RNA Polymerase/genetics, SARS-CoV-2, Severe Acute Respiratory Syndrome, Spatio-Temporal Analysis, World Health Organization
- in
- Eurosurveillance
- volume
- 25
- issue
- 32
- publisher
- European Centre for Disease Prevention and Control (ECDC)
- external identifiers
-
- scopus:85089543989
- pmid:32794443
- ISSN
- 1560-7917
- DOI
- 10.2807/1560-7917.ES.2020.25.32.2001410
- language
- English
- LU publication?
- no
- id
- ba8eb567-5d1a-4729-b3bc-cd730a9c13c1
- date added to LUP
- 2021-04-11 20:16:56
- date last changed
- 2024-09-21 18:41:44
@article{ba8eb567-5d1a-4729-b3bc-cd730a9c13c1, abstract = {{<p>We show the distribution of severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) genetic clades over time and between countries and outline potential genomic surveillance objectives. We applied three genomic nomenclature systems to all sequence data from the World Health Organization European Region available until 10 July 2020. We highlight the importance of real-time sequencing and data dissemination in a pandemic situation, compare the nomenclatures and lay a foundation for future European genomic surveillance of SARS-CoV-2.</p>}}, author = {{Alm, Erik and Broberg, Eeva K and Connor, Thomas and Hodcroft, Emma B and Komissarov, Andrey B and Maurer-Stroh, Sebastian and Melidou, Angeliki and Neher, Richard A and O'Toole, Áine and Pereyaslov, Dmitriy}}, issn = {{1560-7917}}, keywords = {{Base Sequence; Betacoronavirus/genetics; COVID-19; Coronavirus/genetics; Coronavirus Infections/epidemiology; Europe/epidemiology; Genome, Viral/genetics; Humans; Pandemics; Phylogeography; Pneumonia, Viral/epidemiology; RNA, Viral/analysis; RNA-Dependent RNA Polymerase/genetics; SARS-CoV-2; Severe Acute Respiratory Syndrome; Spatio-Temporal Analysis; World Health Organization}}, language = {{eng}}, number = {{32}}, publisher = {{European Centre for Disease Prevention and Control (ECDC)}}, series = {{Eurosurveillance}}, title = {{Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020}}, url = {{http://dx.doi.org/10.2807/1560-7917.ES.2020.25.32.2001410}}, doi = {{10.2807/1560-7917.ES.2020.25.32.2001410}}, volume = {{25}}, year = {{2020}}, }