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Spatio-temporal registration of 3D microscopy image sequences of arabidopsis floral meristems

Michelin, Gaël ; Refahi, Yassin; Wightman, Raymond; Jönsson, Henrik LU ; Traas, Jan; Godin, Christophe and Malandain, Grégoire (2016)
Abstract
The shoot apical meristem (SAM) is at the origin of all the plant above-ground organs (including stems, leaves and flowers) and is a biological object of interest for the understanding of plant morphogenesis. The quantification of tissue growth at a cellular level requires the analysis of 3D microscopic image sequences of developing meristems. To address inter-individual variability, it is also required to compare individuals. This obviously implies the ability to process inter-individual registration, i.e. to compute spatial and temporal correspondences between sequences from different meristems. In the present work, we propose a spatial registration method dedicated to microscopy floral meristem (FM) images, and the identification, for a... (More)
The shoot apical meristem (SAM) is at the origin of all the plant above-ground organs (including stems, leaves and flowers) and is a biological object of interest for the understanding of plant morphogenesis. The quantification of tissue growth at a cellular level requires the analysis of 3D microscopic image sequences of developing meristems. To address inter-individual variability, it is also required to compare individuals. This obviously implies the ability to process inter-individual registration, i.e. to compute spatial and temporal correspondences between sequences from different meristems. In the present work, we propose a spatial registration method dedicated to microscopy floral meristem (FM) images, and the identification, for a given still image of a meristem, of its best corresponding time-point in a sequence of an other individual (temporal registration). (Less)
Please use this url to cite or link to this publication:
author
organization
publishing date
type
Chapter in Book/Report/Conference proceeding
publication status
published
subject
host publication
Biomedical Imaging, IEEE International Symposium on
publisher
IEEE Xplore
external identifiers
  • scopus:84978410049
ISBN
978-1-4799-2349-6
978-1-4799-2351-9
DOI
10.1109/ISBI.2016.7493464
language
English
LU publication?
yes
id
dc812e54-46a7-4e9b-8de6-1cf864d96276
date added to LUP
2019-07-31 18:03:16
date last changed
2019-10-15 07:11:47
@inproceedings{dc812e54-46a7-4e9b-8de6-1cf864d96276,
  abstract     = {The shoot apical meristem (SAM) is at the origin of all the plant above-ground organs (including stems, leaves and flowers) and is a biological object of interest for the understanding of plant morphogenesis. The quantification of tissue growth at a cellular level requires the analysis of 3D microscopic image sequences of developing meristems. To address inter-individual variability, it is also required to compare individuals. This obviously implies the ability to process inter-individual registration, i.e. to compute spatial and temporal correspondences between sequences from different meristems. In the present work, we propose a spatial registration method dedicated to microscopy floral meristem (FM) images, and the identification, for a given still image of a meristem, of its best corresponding time-point in a sequence of an other individual (temporal registration).},
  author       = {Michelin, Gaël  and Refahi, Yassin and Wightman, Raymond and Jönsson, Henrik and Traas, Jan and Godin, Christophe  and Malandain, Grégoire },
  isbn         = {978-1-4799-2349-6 },
  language     = {eng},
  publisher    = {IEEE Xplore},
  title        = {Spatio-temporal registration of 3D microscopy image sequences of arabidopsis floral meristems},
  url          = {http://dx.doi.org/10.1109/ISBI.2016.7493464},
  year         = {2016},
}