Spatio-temporal registration of 3D microscopy image sequences of arabidopsis floral meristems
(2016)- Abstract
- The shoot apical meristem (SAM) is at the origin of all the plant above-ground organs (including stems, leaves and flowers) and is a biological object of interest for the understanding of plant morphogenesis. The quantification of tissue growth at a cellular level requires the analysis of 3D microscopic image sequences of developing meristems. To address inter-individual variability, it is also required to compare individuals. This obviously implies the ability to process inter-individual registration, i.e. to compute spatial and temporal correspondences between sequences from different meristems. In the present work, we propose a spatial registration method dedicated to microscopy floral meristem (FM) images, and the identification, for a... (More)
- The shoot apical meristem (SAM) is at the origin of all the plant above-ground organs (including stems, leaves and flowers) and is a biological object of interest for the understanding of plant morphogenesis. The quantification of tissue growth at a cellular level requires the analysis of 3D microscopic image sequences of developing meristems. To address inter-individual variability, it is also required to compare individuals. This obviously implies the ability to process inter-individual registration, i.e. to compute spatial and temporal correspondences between sequences from different meristems. In the present work, we propose a spatial registration method dedicated to microscopy floral meristem (FM) images, and the identification, for a given still image of a meristem, of its best corresponding time-point in a sequence of an other individual (temporal registration). (Less)
Please use this url to cite or link to this publication:
https://lup.lub.lu.se/record/dc812e54-46a7-4e9b-8de6-1cf864d96276
- author
- Michelin, Gaël ; Refahi, Yassin ; Wightman, Raymond ; Jönsson, Henrik LU ; Traas, Jan ; Godin, Christophe and Malandain, Grégoire
- organization
- publishing date
- 2016
- type
- Chapter in Book/Report/Conference proceeding
- publication status
- published
- subject
- host publication
- Biomedical Imaging, IEEE International Symposium on
- publisher
- IEEE - Institute of Electrical and Electronics Engineers Inc.
- external identifiers
-
- scopus:84978410049
- ISBN
- 978-1-4799-2351-9
- 978-1-4799-2349-6
- DOI
- 10.1109/ISBI.2016.7493464
- language
- English
- LU publication?
- yes
- id
- dc812e54-46a7-4e9b-8de6-1cf864d96276
- date added to LUP
- 2019-07-31 18:03:16
- date last changed
- 2025-04-17 04:21:45
@inproceedings{dc812e54-46a7-4e9b-8de6-1cf864d96276, abstract = {{The shoot apical meristem (SAM) is at the origin of all the plant above-ground organs (including stems, leaves and flowers) and is a biological object of interest for the understanding of plant morphogenesis. The quantification of tissue growth at a cellular level requires the analysis of 3D microscopic image sequences of developing meristems. To address inter-individual variability, it is also required to compare individuals. This obviously implies the ability to process inter-individual registration, i.e. to compute spatial and temporal correspondences between sequences from different meristems. In the present work, we propose a spatial registration method dedicated to microscopy floral meristem (FM) images, and the identification, for a given still image of a meristem, of its best corresponding time-point in a sequence of an other individual (temporal registration).}}, author = {{Michelin, Gaël and Refahi, Yassin and Wightman, Raymond and Jönsson, Henrik and Traas, Jan and Godin, Christophe and Malandain, Grégoire}}, booktitle = {{Biomedical Imaging, IEEE International Symposium on}}, isbn = {{978-1-4799-2351-9}}, language = {{eng}}, publisher = {{IEEE - Institute of Electrical and Electronics Engineers Inc.}}, title = {{Spatio-temporal registration of 3D microscopy image sequences of arabidopsis floral meristems}}, url = {{http://dx.doi.org/10.1109/ISBI.2016.7493464}}, doi = {{10.1109/ISBI.2016.7493464}}, year = {{2016}}, }