REPRESENTATIVE SELECTION OF PROTEINS BASED ON NUCLEAR FAMILIES
(1995) In Protein Engineering 8(5). p.501-503- Abstract
- The selection of unbiased representatives from a large database is complicated by the requirement for the chosen entries to be not only genuinely different from each other but also typical for the family of related entries. A method satisfying this 2-fold objective was developed by equipping complete linkage clustering with a novel noise elimination procedure to deal with overlapping cluster structure, A total of 200 nuclear families of truly related Brookhaven Protein Data Bank structures were generated, from which any entry can be chosen to represent its family.
Please use this url to cite or link to this publication:
https://lup.lub.lu.se/record/3853212
- author
- BOBERG, J ; SALAKOSKI, T and Vihinen, Mauno LU
- publishing date
- 1995
- type
- Contribution to journal
- publication status
- published
- subject
- keywords
- COMPLETE LINKAGE CLUSTERING, NOISE ELIMINATION, PDB FAMILIES, REPRESENTATIVE SELECTION
- in
- Protein Engineering
- volume
- 8
- issue
- 5
- pages
- 501 - 503
- publisher
- Oxford University Press
- external identifiers
-
- wos:A1995RN59100013
- scopus:0029129582
- ISSN
- 1460-213X
- DOI
- 10.1093/protein/8.5.501
- language
- English
- LU publication?
- no
- id
- 05c86726-06be-4f4f-8e67-ce57a18cbd73 (old id 3853212)
- date added to LUP
- 2016-04-01 11:47:36
- date last changed
- 2021-01-03 03:01:13
@article{05c86726-06be-4f4f-8e67-ce57a18cbd73, abstract = {{The selection of unbiased representatives from a large database is complicated by the requirement for the chosen entries to be not only genuinely different from each other but also typical for the family of related entries. A method satisfying this 2-fold objective was developed by equipping complete linkage clustering with a novel noise elimination procedure to deal with overlapping cluster structure, A total of 200 nuclear families of truly related Brookhaven Protein Data Bank structures were generated, from which any entry can be chosen to represent its family.}}, author = {{BOBERG, J and SALAKOSKI, T and Vihinen, Mauno}}, issn = {{1460-213X}}, keywords = {{COMPLETE LINKAGE CLUSTERING; NOISE ELIMINATION; PDB FAMILIES; REPRESENTATIVE SELECTION}}, language = {{eng}}, number = {{5}}, pages = {{501--503}}, publisher = {{Oxford University Press}}, series = {{Protein Engineering}}, title = {{REPRESENTATIVE SELECTION OF PROTEINS BASED ON NUCLEAR FAMILIES}}, url = {{http://dx.doi.org/10.1093/protein/8.5.501}}, doi = {{10.1093/protein/8.5.501}}, volume = {{8}}, year = {{1995}}, }