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Novel Homozygous Missense Mutation in the ARG1 Gene in a Large Sudanese Family

Elsayed, Liena E.O. ; Mohammed, Inaam N. ; Hamed, Ahlam A.A. ; Elseed, Maha A. ; Salih, Mustafa A.M. ; Yahia, Ashraf LU orcid ; Abubaker, Rayan ; Koko, Mahmoud ; Abd Allah, Amal S.I. and Elbashir, Mustafa I. , et al. (2020) In Frontiers in Neurology 11.
Abstract

Background: Arginases catalyze the last step in the urea cycle. Hyperargininemia, a rare autosomal-recessive disorder of the urea cycle, presents after the first year of age with regression of milestones and evolves gradually into progressive spastic quadriplegia and cognitive dysfunction. Genetic studies reported various mutations in the ARG1 gene that resulted in hyperargininemia due to a complete or partial loss of arginase activity. Case Presentation: Five patients from an extended highly consanguineous Sudanese family presented with regression of the acquired milestones, spastic quadriplegia, and mental retardation. The disease onset ranged from 1 to 3 years of age. Two patients had epileptic seizures and one patient had... (More)

Background: Arginases catalyze the last step in the urea cycle. Hyperargininemia, a rare autosomal-recessive disorder of the urea cycle, presents after the first year of age with regression of milestones and evolves gradually into progressive spastic quadriplegia and cognitive dysfunction. Genetic studies reported various mutations in the ARG1 gene that resulted in hyperargininemia due to a complete or partial loss of arginase activity. Case Presentation: Five patients from an extended highly consanguineous Sudanese family presented with regression of the acquired milestones, spastic quadriplegia, and mental retardation. The disease onset ranged from 1 to 3 years of age. Two patients had epileptic seizures and one patient had stereotypic clapping. Genetic testing using whole-exome sequencing, done for the patients and a healthy parent, confirmed the presence of a homozygous novel missense variant in the ARG1 gene [GRCh37 (NM_001244438.1): exon 4: g.131902487T>A, c.458T>A, p.(Val153Glu)]. The variant was predicted pathogenic by five algorithms and affected a highly conserved amino acid located in the protein domain ureohydrolase, arginase subgroup. Sanger sequencing of 13 sampled family members revealed complete co-segregation between the variant and the disease distribution in the family in line with an autosomal-recessive mode of inheritance. Biochemical analysis confirmed hyperargininemia in five patients. Conclusion: This study reports the first Sudanese family with ARG1 mutation. The reported variant is a loss-of-function missense mutation. Its pathogenicity is strongly supported by the clinical phenotype, the computational functional impact prediction, the complete co-segregation with the disease, and the biochemical assessment.

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publishing date
type
Contribution to journal
publication status
published
keywords
ARG1 gene, hyperargininemia, spastic quadriplegia, Sudan, whole exome sequencing
in
Frontiers in Neurology
volume
11
article number
569996
publisher
Frontiers Media S. A.
external identifiers
  • scopus:85095979603
ISSN
1664-2295
DOI
10.3389/fneur.2020.569996
language
English
LU publication?
no
additional info
Publisher Copyright: © Copyright © 2020 Elsayed, Mohammed, Hamed, Elseed, Salih, Yahia, Abubaker, Koko, Abd Allah, Elbashir, Ibrahim, Brice, Ahmed and Stevanin.
id
292fc0ae-976d-4ced-afa3-50d34faea778
date added to LUP
2026-06-05 10:41:41
date last changed
2026-06-06 03:34:13
@article{292fc0ae-976d-4ced-afa3-50d34faea778,
  abstract     = {{<p>Background: Arginases catalyze the last step in the urea cycle. Hyperargininemia, a rare autosomal-recessive disorder of the urea cycle, presents after the first year of age with regression of milestones and evolves gradually into progressive spastic quadriplegia and cognitive dysfunction. Genetic studies reported various mutations in the ARG1 gene that resulted in hyperargininemia due to a complete or partial loss of arginase activity. Case Presentation: Five patients from an extended highly consanguineous Sudanese family presented with regression of the acquired milestones, spastic quadriplegia, and mental retardation. The disease onset ranged from 1 to 3 years of age. Two patients had epileptic seizures and one patient had stereotypic clapping. Genetic testing using whole-exome sequencing, done for the patients and a healthy parent, confirmed the presence of a homozygous novel missense variant in the ARG1 gene [GRCh37 (NM_001244438.1): exon 4: g.131902487T&gt;A, c.458T&gt;A, p.(Val153Glu)]. The variant was predicted pathogenic by five algorithms and affected a highly conserved amino acid located in the protein domain ureohydrolase, arginase subgroup. Sanger sequencing of 13 sampled family members revealed complete co-segregation between the variant and the disease distribution in the family in line with an autosomal-recessive mode of inheritance. Biochemical analysis confirmed hyperargininemia in five patients. Conclusion: This study reports the first Sudanese family with ARG1 mutation. The reported variant is a loss-of-function missense mutation. Its pathogenicity is strongly supported by the clinical phenotype, the computational functional impact prediction, the complete co-segregation with the disease, and the biochemical assessment.</p>}},
  author       = {{Elsayed, Liena E.O. and Mohammed, Inaam N. and Hamed, Ahlam A.A. and Elseed, Maha A. and Salih, Mustafa A.M. and Yahia, Ashraf and Abubaker, Rayan and Koko, Mahmoud and Abd Allah, Amal S.I. and Elbashir, Mustafa I. and Ibrahim, Muntaser E. and Brice, Alexis and Ahmed, Ammar E. and Stevanin, Giovanni}},
  issn         = {{1664-2295}},
  keywords     = {{ARG1 gene; hyperargininemia; spastic quadriplegia; Sudan; whole exome sequencing}},
  language     = {{eng}},
  month        = {{10}},
  publisher    = {{Frontiers Media S. A.}},
  series       = {{Frontiers in Neurology}},
  title        = {{Novel Homozygous Missense Mutation in the ARG1 Gene in a Large Sudanese Family}},
  url          = {{http://dx.doi.org/10.3389/fneur.2020.569996}},
  doi          = {{10.3389/fneur.2020.569996}},
  volume       = {{11}},
  year         = {{2020}},
}