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COL4A2 is associated with lacunar ischemic stroke and deep ICH : Meta-analyses among 21,500 cases and 40,600 controls

Rannikmäe, Kristiina ; Sivakumaran, Vhinoth ; Millar, Henry ; Malik, Rainer ; Anderson, Christopher D. ; Chong, Mike ; Dave, Tushar ; Falcone, Guido J. ; Fernandez-Cadenas, Israel and Jimenez-Conde, Jordi , et al. (2017) In Neurology 89(17). p.1829-1839
Abstract

Objective: To determine whether common variants in familial cerebral small vessel disease (SVD) genes confer risk of sporadic cerebral SVD. Methods: We meta-analyzed genotype data from individuals of European ancestry to determine associations of common single nucleotide polymorphisms (SNPs) in 6 familial cerebral SVD genes (COL4A1, COL4A2, NOTCH3, HTRA1, TREX1, and CECR1) with intracerebral hemorrhage (ICH) (deep, lobar, all; 1,878 cases, 2,830 controls) and ischemic stroke (IS) (lacunar, cardioembolic, large vessel disease, all; 19,569 cases, 37,853 controls). We applied data quality filters and set statistical significance thresholds accounting for linkage disequilibrium and multiple testing. Results: A locus in COL4A2 was associated... (More)

Objective: To determine whether common variants in familial cerebral small vessel disease (SVD) genes confer risk of sporadic cerebral SVD. Methods: We meta-analyzed genotype data from individuals of European ancestry to determine associations of common single nucleotide polymorphisms (SNPs) in 6 familial cerebral SVD genes (COL4A1, COL4A2, NOTCH3, HTRA1, TREX1, and CECR1) with intracerebral hemorrhage (ICH) (deep, lobar, all; 1,878 cases, 2,830 controls) and ischemic stroke (IS) (lacunar, cardioembolic, large vessel disease, all; 19,569 cases, 37,853 controls). We applied data quality filters and set statistical significance thresholds accounting for linkage disequilibrium and multiple testing. Results: A locus in COL4A2 was associated (significance threshold p , 3.5 3 1024) with both lacunar IS (lead SNP rs9515201: odds ratio [OR] 1.17, 95%confidence interval [CI] 1.11-1.24, p 56.62 31028) and deep ICH (lead SNP rs4771674: OR 1.28, 95%CI 1.13-1.44, p 55.76 3 1025). A SNP in HTRA1 was associated (significance threshold p , 5.5 3 1024) with lacunar IS (rs79043147: OR 1.23, 95%CI 1.10-1.37, p 5 1.90 3 1024) and less robustly with deep ICH. There was no clear evidence for association of common variants in either COL4A2 or HTRA1 with non-SVD strokes or in any of the other genes with any stroke phenotype.

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organization
publishing date
type
Contribution to journal
publication status
published
subject
keywords
COL4A2, ischemic stroke, ICH
in
Neurology
volume
89
issue
17
pages
11 pages
publisher
Lippincott Williams & Wilkins
external identifiers
  • scopus:85031410982
  • pmid:28954878
  • wos:000417674200016
ISSN
0028-3878
DOI
10.1212/WNL.0000000000004560
language
English
LU publication?
yes
id
05d0c062-097b-49e0-a9e0-1b97a70016b7
date added to LUP
2017-11-13 10:18:29
date last changed
2024-06-25 07:47:09
@article{05d0c062-097b-49e0-a9e0-1b97a70016b7,
  abstract     = {{<p>Objective: To determine whether common variants in familial cerebral small vessel disease (SVD) genes confer risk of sporadic cerebral SVD. Methods: We meta-analyzed genotype data from individuals of European ancestry to determine associations of common single nucleotide polymorphisms (SNPs) in 6 familial cerebral SVD genes (COL4A1, COL4A2, NOTCH3, HTRA1, TREX1, and CECR1) with intracerebral hemorrhage (ICH) (deep, lobar, all; 1,878 cases, 2,830 controls) and ischemic stroke (IS) (lacunar, cardioembolic, large vessel disease, all; 19,569 cases, 37,853 controls). We applied data quality filters and set statistical significance thresholds accounting for linkage disequilibrium and multiple testing. Results: A locus in COL4A2 was associated (significance threshold p , 3.5 3 1024) with both lacunar IS (lead SNP rs9515201: odds ratio [OR] 1.17, 95%confidence interval [CI] 1.11-1.24, p 56.62 31028) and deep ICH (lead SNP rs4771674: OR 1.28, 95%CI 1.13-1.44, p 55.76 3 1025). A SNP in HTRA1 was associated (significance threshold p , 5.5 3 1024) with lacunar IS (rs79043147: OR 1.23, 95%CI 1.10-1.37, p 5 1.90 3 1024) and less robustly with deep ICH. There was no clear evidence for association of common variants in either COL4A2 or HTRA1 with non-SVD strokes or in any of the other genes with any stroke phenotype.</p>}},
  author       = {{Rannikmäe, Kristiina and Sivakumaran, Vhinoth and Millar, Henry and Malik, Rainer and Anderson, Christopher D. and Chong, Mike and Dave, Tushar and Falcone, Guido J. and Fernandez-Cadenas, Israel and Jimenez-Conde, Jordi and Lindgren, Arne and Montaner, Joan and O'Donnell, Martin and Paré, Guillaume and Radmanesh, Farid and Rost, Natalia S. and Slowik, Agnieszka and Söderholm, Martin and Traylor, Matthew and Pulit, Sara L and Seshadri, Sudha and Worrall, Brad B. and Woo, Daniel and Markus, Hugh S. and Mitchell, Braxton D. and Dichgans, Martin and Rosand, Jonathan and Sudlow, Cathie L M}},
  issn         = {{0028-3878}},
  keywords     = {{COL4A2; ischemic stroke; ICH}},
  language     = {{eng}},
  month        = {{10}},
  number       = {{17}},
  pages        = {{1829--1839}},
  publisher    = {{Lippincott Williams & Wilkins}},
  series       = {{Neurology}},
  title        = {{COL4A2 is associated with lacunar ischemic stroke and deep ICH : Meta-analyses among 21,500 cases and 40,600 controls}},
  url          = {{http://dx.doi.org/10.1212/WNL.0000000000004560}},
  doi          = {{10.1212/WNL.0000000000004560}},
  volume       = {{89}},
  year         = {{2017}},
}