Towards an international standard for PCR-based detection of food-borne thermotolerant Campylobacters: assay development and analytical validation.
(2003) In Applied and Environmental Microbiology 69(9). p.5664-5669- Abstract
- As part of a European research project (FOOD-PCR), we developed a standardized and robust PCR detection assay specific for the three most frequently reported food-borne pathogenic Campylobacter species, C. jejuni, C. coli, and C. lari. Fifteen published and unpublished PCR primers targeting the 16S rRNA gene were tested in all possible pairwise combinations, as well as two published primers targeting the 23S rRNA gene. A panel of 150 strains including target and nontarget strains was used in an in-house validation. Only one primer pair, OT1559 plus 18-1, was found to be selective. The inclusivity and exclusivity were 100 and 97%, respectively. In an attempt to find a thermostable DNA polymerase more resistant than Taq to PCR inhibitors... (More)
- As part of a European research project (FOOD-PCR), we developed a standardized and robust PCR detection assay specific for the three most frequently reported food-borne pathogenic Campylobacter species, C. jejuni, C. coli, and C. lari. Fifteen published and unpublished PCR primers targeting the 16S rRNA gene were tested in all possible pairwise combinations, as well as two published primers targeting the 23S rRNA gene. A panel of 150 strains including target and nontarget strains was used in an in-house validation. Only one primer pair, OT1559 plus 18-1, was found to be selective. The inclusivity and exclusivity were 100 and 97%, respectively. In an attempt to find a thermostable DNA polymerase more resistant than Taq to PCR inhibitors present in chicken samples, three DNA polymerases were evaluated. The DNA polymerase Tth was not inhibited at a concentration of 2% (vol/vol) chicken carcass rinse, unlike both Taq DNA polymerase and DyNAzyme. Based on these results, Tth was selected as the most suitable enzyme for the assay. The standardized PCR test described shows potential for use in large-scale screening programs for food-borne Campylobacter species under the assay conditions specified. (Less)
Please use this url to cite or link to this publication:
https://lup.lub.lu.se/record/132812
- author
- Lübeck, P S ; Wolffs, Petra LU ; On, S L ; Ahrens, P ; Rådström, Peter LU and Hoorfar, J
- organization
- publishing date
- 2003
- type
- Contribution to journal
- publication status
- published
- subject
- in
- Applied and Environmental Microbiology
- volume
- 69
- issue
- 9
- pages
- 5664 - 5669
- publisher
- American Society for Microbiology
- external identifiers
-
- wos:000185437000075
- pmid:12957958
- scopus:17344386538
- ISSN
- 0099-2240
- DOI
- 10.1128/AEM.69.9.5664-5669.2003
- language
- English
- LU publication?
- yes
- id
- 609b5bfd-6f0a-475e-9a63-c648ed35ad26 (old id 132812)
- date added to LUP
- 2016-04-01 12:09:03
- date last changed
- 2022-04-21 03:09:35
@article{609b5bfd-6f0a-475e-9a63-c648ed35ad26,
abstract = {{As part of a European research project (FOOD-PCR), we developed a standardized and robust PCR detection assay specific for the three most frequently reported food-borne pathogenic Campylobacter species, C. jejuni, C. coli, and C. lari. Fifteen published and unpublished PCR primers targeting the 16S rRNA gene were tested in all possible pairwise combinations, as well as two published primers targeting the 23S rRNA gene. A panel of 150 strains including target and nontarget strains was used in an in-house validation. Only one primer pair, OT1559 plus 18-1, was found to be selective. The inclusivity and exclusivity were 100 and 97%, respectively. In an attempt to find a thermostable DNA polymerase more resistant than Taq to PCR inhibitors present in chicken samples, three DNA polymerases were evaluated. The DNA polymerase Tth was not inhibited at a concentration of 2% (vol/vol) chicken carcass rinse, unlike both Taq DNA polymerase and DyNAzyme. Based on these results, Tth was selected as the most suitable enzyme for the assay. The standardized PCR test described shows potential for use in large-scale screening programs for food-borne Campylobacter species under the assay conditions specified.}},
author = {{Lübeck, P S and Wolffs, Petra and On, S L and Ahrens, P and Rådström, Peter and Hoorfar, J}},
issn = {{0099-2240}},
language = {{eng}},
number = {{9}},
pages = {{5664--5669}},
publisher = {{American Society for Microbiology}},
series = {{Applied and Environmental Microbiology}},
title = {{Towards an international standard for PCR-based detection of food-borne thermotolerant Campylobacters: assay development and analytical validation.}},
url = {{https://lup.lub.lu.se/search/files/2802452/624330.pdf}},
doi = {{10.1128/AEM.69.9.5664-5669.2003}},
volume = {{69}},
year = {{2003}},
}