Skip to main content

Lund University Publications

LUND UNIVERSITY LIBRARIES

An introduction to BioArray software environment

Troein, Carl LU orcid ; Vallon-Christersson, Johan LU orcid and Saal, Lao LU orcid (2006) In Methods in Enzymology 411. p.99-119
Abstract
BioArray Software Environment (BASE) is a web-based software package for storing, searching, and analyzing locally generated microarray data and information surrounding microarray production. The workflow begins in sample management and, optionally, microtiter plate tracking and ends in visualization and analysis of entire experiments. The relative ease with which new analysis plug-ins can be added has given rise to a plethora of third-party tools, and the licensing terms (GNU GPL) encourage local modifications of the software. This introduction to BASE describes the basics of working with the software, both in general and in more detail for the various parts. It also provides some hints about more advanced usage and a section on what is... (More)
BioArray Software Environment (BASE) is a web-based software package for storing, searching, and analyzing locally generated microarray data and information surrounding microarray production. The workflow begins in sample management and, optionally, microtiter plate tracking and ends in visualization and analysis of entire experiments. The relative ease with which new analysis plug-ins can be added has given rise to a plethora of third-party tools, and the licensing terms (GNU GPL) encourage local modifications of the software. This introduction to BASE describes the basics of working with the software, both in general and in more detail for the various parts. It also provides some hints about more advanced usage and a section on what is needed to set up your own BASE server. The information is current as of BASE version 1.2.17b, which was released on November 6, 2005. (Less)
Please use this url to cite or link to this publication:
author
; and
organization
publishing date
type
Contribution to journal
publication status
published
subject
in
Methods in Enzymology
volume
411
pages
99 - 119
publisher
Academic Press
external identifiers
  • wos:000244506300007
  • scopus:33747894108
ISSN
0076-6879
DOI
10.1016/S0076-6879(06)11007-1
language
English
LU publication?
yes
id
5719bcba-fc19-44c7-9254-086fc18cf831 (old id 672817)
date added to LUP
2016-04-01 15:47:57
date last changed
2021-01-06 08:56:17
@article{5719bcba-fc19-44c7-9254-086fc18cf831,
  abstract     = {BioArray Software Environment (BASE) is a web-based software package for storing, searching, and analyzing locally generated microarray data and information surrounding microarray production. The workflow begins in sample management and, optionally, microtiter plate tracking and ends in visualization and analysis of entire experiments. The relative ease with which new analysis plug-ins can be added has given rise to a plethora of third-party tools, and the licensing terms (GNU GPL) encourage local modifications of the software. This introduction to BASE describes the basics of working with the software, both in general and in more detail for the various parts. It also provides some hints about more advanced usage and a section on what is needed to set up your own BASE server. The information is current as of BASE version 1.2.17b, which was released on November 6, 2005.},
  author       = {Troein, Carl and Vallon-Christersson, Johan and Saal, Lao},
  issn         = {0076-6879},
  language     = {eng},
  pages        = {99--119},
  publisher    = {Academic Press},
  series       = {Methods in Enzymology},
  title        = {An introduction to BioArray software environment},
  url          = {http://dx.doi.org/10.1016/S0076-6879(06)11007-1},
  doi          = {10.1016/S0076-6879(06)11007-1},
  volume       = {411},
  year         = {2006},
}