Nanoscale binding site localization by molecular distance estimation on native cell surfaces using topological image averaging
Kumra Ahnlide, Vibha LU ; Kumra Ahnlide, Johannes LU
; Wrighton, Sebastian
LU
; Beech, Jason P
LU
and Nordenfelt, Pontus
LU
(2022)
In eLife
11.
p.1-15
- Abstract
Antibody binding to cell surface proteins plays a crucial role in immunity, and the location of an epitope can altogether determine the immunological outcome of a host-target interaction. Techniques available today for epitope identification are costly, time-consuming, and unsuited for high-throughput analysis. Fast and efficient screening of epitope location can be useful for the development of therapeutic monoclonal antibodies and vaccines. Cellular morphology typically varies, and antibodies often bind heterogeneously across a cell surface, making traditional particle-averaging strategies challenging for accurate native antibody localization. In the present work, we have developed a method, SiteLoc, for imaging-based molecular... (More)
Antibody binding to cell surface proteins plays a crucial role in immunity, and the location of an epitope can altogether determine the immunological outcome of a host-target interaction. Techniques available today for epitope identification are costly, time-consuming, and unsuited for high-throughput analysis. Fast and efficient screening of epitope location can be useful for the development of therapeutic monoclonal antibodies and vaccines. Cellular morphology typically varies, and antibodies often bind heterogeneously across a cell surface, making traditional particle-averaging strategies challenging for accurate native antibody localization. In the present work, we have developed a method, SiteLoc, for imaging-based molecular localization on cellular surface proteins. Nanometer-scale resolution is achieved through localization in one dimension, namely, the distance from a bound ligand to a reference surface. This is done by using topological image averaging. Our results show that this method is well suited for antibody binding site measurements on native cell surface morphology and that it can be applied to other molecular distance estimations as well.
(Less)
- author
- Kumra Ahnlide, Vibha
LU
; Kumra Ahnlide, Johannes
LU
; Wrighton, Sebastian
LU
; Beech, Jason P
LU
and Nordenfelt, Pontus
LU
- organization
- publishing date
- 2022
- type
- Contribution to journal
- publication status
- published
- subject
- in
- eLife
- volume
- 11
- article number
- e64709
- pages
- 1 - 15
- publisher
- eLife Sciences Publications
- external identifiers
-
- pmid:35200140
- scopus:85125315487
- ISSN
- 2050-084X
- DOI
- 10.7554/eLife.64709
- language
- English
- LU publication?
- yes
- additional info
- © 2022, Kumra Ahnlide et al.
- id
- cdd6b74c-5d9b-4b74-9183-6dea93eb0dfa
- date added to LUP
- 2022-03-04 04:51:18
- date last changed
- 2024-09-19 20:18:01
@article{cdd6b74c-5d9b-4b74-9183-6dea93eb0dfa,
abstract = {{<p>Antibody binding to cell surface proteins plays a crucial role in immunity, and the location of an epitope can altogether determine the immunological outcome of a host-target interaction. Techniques available today for epitope identification are costly, time-consuming, and unsuited for high-throughput analysis. Fast and efficient screening of epitope location can be useful for the development of therapeutic monoclonal antibodies and vaccines. Cellular morphology typically varies, and antibodies often bind heterogeneously across a cell surface, making traditional particle-averaging strategies challenging for accurate native antibody localization. In the present work, we have developed a method, SiteLoc, for imaging-based molecular localization on cellular surface proteins. Nanometer-scale resolution is achieved through localization in one dimension, namely, the distance from a bound ligand to a reference surface. This is done by using topological image averaging. Our results show that this method is well suited for antibody binding site measurements on native cell surface morphology and that it can be applied to other molecular distance estimations as well.</p>}},
author = {{Kumra Ahnlide, Vibha and Kumra Ahnlide, Johannes and Wrighton, Sebastian and Beech, Jason P and Nordenfelt, Pontus}},
issn = {{2050-084X}},
language = {{eng}},
pages = {{1--15}},
publisher = {{eLife Sciences Publications}},
series = {{eLife}},
title = {{Nanoscale binding site localization by molecular distance estimation on native cell surfaces using topological image averaging}},
url = {{http://dx.doi.org/10.7554/eLife.64709}},
doi = {{10.7554/eLife.64709}},
volume = {{11}},
year = {{2022}},
}