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2023
Mark Rapid Profiling of Protein Complex Reorganization in Perturbed Systems
Bludau, Isabell ; Nicod, Charlotte ; Martelli, Claudia ; Xue, Peng ; Heusel, Moritz ^LU ; Fossati, Andrea ; Uliana, Federico ; Frommelt, Fabian ; Aebersold, Ruedi and Collins, Ben C. (2023) In Journal of Proteome Research 22(5). p.1520-1536
- Contribution to journal › Article
2021
Mark Systematic detection of functional proteoform groups from bottom-up proteomic datasets
Bludau, Isabell ; Frank, Max ; Dörig, Christian ; Cai, Yujia ; Heusel, Moritz ^LU ; Rosenberger, George ; Picotti, Paola ; Collins, Ben C. ; Röst, Hannes and Aebersold, Ruedi (2021) In Nature Communications 12(1).
- Contribution to journal › Article
Mark PCprophet : a framework for protein complex prediction and differential analysis using proteomic data
Fossati, Andrea ; Li, Chen ; Uliana, Federico ; Wendt, Fabian ; Frommelt, Fabian ; Sykacek, Peter ; Heusel, Moritz ^LU ; Hallal, Mahmoud ; Bludau, Isabell and Capraz, Tümay , et al. (2021) In Nature Methods 18(5). p.520-527
- Contribution to journal › Article
2020
Mark Complex-centric proteome profiling by SEC-SWATH-MS for the parallel detection of hundreds of protein complexes
Bludau, Isabell ; Heusel, Moritz ^LU ; Frank, Max ; Rosenberger, George ; Hafen, Robin ; Banaei-Esfahani, Amir ; van Drogen, Audrey ; Collins, Ben C. ; Gstaiger, Matthias and Aebersold, Ruedi (2020) In Nature Protocols 15(8). p.2341-2386
- Contribution to journal › Article
Mark A Global Screen for Assembly State Changes of the Mitotic Proteome by SEC-SWATH-MS
Heusel, Moritz ^LU ; Frank, Max ; Köhler, Mario ; Amon, Sabine ; Frommelt, Fabian ; Rosenberger, George ; Bludau, Isabell ; Aulakh, Simran ; Linder, Monika I. and Liu, Yansheng , et al. (2020) In Cell systems 10(2). p.6-155
- Contribution to journal › Article
Mark A high-stringency blueprint of the human proteome
Adhikari, Subash ; Nice, Edouard C. ; Deutsch, Eric W. ; Lane, Lydie ; Omenn, Gilbert S. ; Pennington, Stephen R. ; Paik, Young Ki ; Overall, Christopher M. ; Corrales, Fernando J. and Cristea, Ileana M. , et al. (2020) In Nature Communications 11(1).
- Contribution to journal › Scientific review
2019
Mark A targeted mass spectrometry strategy for developing proteomic biomarkers : a case study of epithelial ovarian cancer
Huttenhain, Ruth ; Choi, Meena ; Martin de la Fuente, Laura ^LU ; Oehl, Kathrin ; Chang, Ching-Yun ; Zimmermann, Anne-Kathrin ; Malander, Susanne ^LU ; Olsson, Hakan ^LU ; Surinova, Silvia and Clough, Timothy , et al. (2019) In Molecular and Cellular Proteomics 18(9). p.1836-1850
- Contribution to journal › Article
2018
Mark Similarities and Differences of Blood N-Glycoproteins in Five Solid Carcinomas at Localized Clinical Stage Analyzed by SWATH-MS
Sajic, Tatjana ; Liu, Yansheng ; Arvaniti, Eirini ; Surinova, Silvia ; Williams, Evan G. ; Schiess, Ralph ; Hüttenhain, Ruth ; Sethi, Atul ; Pan, Sheng and Brentnall, Teresa A. , et al. (2018) In Cell Reports 23(9). p.5-2831
- Contribution to journal › Article
2015
Mark A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery
Sjöström, Martin ^LU ; Ossola, Reto ; Breslin, Thomas ^LU ; Rinner, Oliver ; Malmstroem, Lars ; Schmidt, Alexander ; Aebersold, Ruedi ; Malmström, Johan ^LU and Niméus, Emma ^LU (2015) In Journal of Proteome Research 14(7). p.2807-2818
- Contribution to journal › Article
2014
Mark Enzymatic generation of peptides flanked by basic amino acids to obtain MS/MS spectra with 2× sequence coverage
Ebhardt, H Alexander ; Nan, Jie ^LU ; Chaulk, Steven G ; Fahlman, Richard P and Aebersold, Ruedi (2014) In Rapid Communications in Mass Spectrometry 28(24). p.43-2735
- Contribution to journal › Article

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