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- 2023
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Mark
uORF4u : a tool for annotation of conserved upstream open reading frames
(
- Contribution to journal › Article
- 2022
-
Mark
A comparison of rule-based and centroid single-sample multiclass predictors for transcriptomic classification
(
- Contribution to journal › Article
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Mark
Analysing high-throughput sequencing data in Python with HTSeq 2.0
(
- Contribution to journal › Article
- 2021
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Mark
multiclassPairs: An R package to train multiclass pair-based classifier
(
- Contribution to journal › Debate/Note/Editorial
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Mark
BigDataProcessor2 : A free and open-source Fiji plugin for inspection and processing of TB sized image data
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- Contribution to journal › Article
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Mark
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data
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- Contribution to journal › Article
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Mark
ZEAL : protein structure alignment based on shape similarity
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- Contribution to journal › Article
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Mark
FlaGs and webFlaGs : discovering novel biology through the analysis of gene neighbourhood conservation
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- Contribution to journal › Article
- 2020
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Mark
Benchmarking immunoinformatic tools for the analysis of antibody repertoire sequences
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- Contribution to journal › Article
- 2019
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Mark
SMSSVD : SubMatrix Selection Singular Value Decomposition
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- Contribution to journal › Article
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Mark
Uncertainty quantification, propagation and characterization by Bayesian analysis combined with global sensitivity analysis applied to dynamical intracellular pathway models
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- Contribution to journal › Article
-
Mark
RTNduals an R/Bioconductor package for analysis of co-regulation and inference of dual regulons
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- Contribution to journal › Letter
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Mark
MPRAscore : robust and non-parametric analysis of massively parallel reporter assays
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- Contribution to journal › Article
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Mark
Pair Matcher (PaM) : fast model-based optimization of treatment/case-control matches
(
- Contribution to journal › Article
- 2018
-
Mark
Using standard microbiome reference groups to simplify beta-diversity analyses and facilitate independent validation
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- Contribution to journal › Article
- 2017
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Mark
LoFtool : a gene intolerance score based on loss-of-function variants in 60 706 individuals
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- Contribution to journal › Article
- 2016
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Mark
PON-Sol : Prediction of effects of amino acid substitutions on protein solubility
(
- Contribution to journal › Article
- 2015
-
Mark
EVpedia: A Community Web Portal for Extracellular Vesicles Research.
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- Contribution to journal › Article
-
Mark
DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.
(
- Contribution to journal › Article
-
Mark
Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images
(
- Contribution to journal › Article
-
Mark
NBSPred: A support vector machine-based high throughput pipeline for plant resistance protein NBSLRR prediction.
(
- Contribution to journal › Article
- 2013
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Mark
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology
(
- Contribution to journal › Article
-
Mark
Ultranet: efficient solver for the sparse inverse covariance selection problem in gene network modeling.
(
- Contribution to journal › Article
- 2012
-
Mark
Analysis of case-control association studies with known risk variants
(
- Contribution to journal › Article
-
Mark
A novel structural position-specific scoring matrix for the prediction of protein secondary structures
(
- Contribution to journal › Article
- 2009
-
Mark
RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities
(
- Contribution to journal › Article
-
Mark
Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution
(
- Contribution to journal › Article
-
Mark
Modified variational bayes EM estimation of hidden markov tree model of cell lineages
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- Contribution to journal › Article
- 2008
-
Mark
Model-based prediction of sequence alignment quality.
(
- Contribution to journal › Article
- 2007
-
Mark
Continuous-index hidden Markov modelling of array CGH copy number data.
(
- Contribution to journal › Article
-
Mark
Multiple spaced seeds for homology search
(
- Contribution to journal › Article
-
Mark
Robust smooth segmentation approach for array CGH data analysis
(
- Contribution to journal › Article
-
Mark
Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry.
(
- Contribution to journal › Article
- 2005
-
Mark
CoGenT++: an extensive and extensible data environment for computational genomics
(
- Contribution to journal › Article
-
Mark
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem
(
- Contribution to journal › Article
-
Mark
PROTEIOS: an open source proteomics initiative
(
- Contribution to journal › Article
- 2004
-
Mark
Approximate geodesic distances reveal biologically relevant structures in microarray data
(
- Contribution to journal › Article
-
Mark
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
(
- Contribution to journal › Article
-
Mark
ACID: a database for microarray clone information
(
- Contribution to journal › Article
- 2003
-
Mark
Efficient estimation of emission probabilities in profile hidden Markov models.
(
- Contribution to journal › Article
-
Mark
RankViaContact: ranking and visualization of amino acid contacts.
(
- Contribution to journal › Article
- 2002
-
Mark
A novel approach to local reliability of sequence alignments.
(
- Contribution to journal › Article
-
Mark
Binary tree-structured vector quantization approach to clustering and visualizing microarray data
(
- Contribution to journal › Article
- 2001
-
Mark
BioWAP, mobile Internet service for bioinformatics
(
- Contribution to journal › Article
- 1999
-
Mark
MUTbase: maintenance and analysis of distributed mutation databases
(
- Contribution to journal › Article