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The plasma proteome reveals distinct signaling pathways associated with PR3-ANCA positive and MPO-ANCA positive vasculitis

Hellbacher, Erik ; van Hoef, Vincent ; Johansson, Alina ; Knight, Ann ; Gunnarsson, Iva ; Bruchfeld, Annette ; Eriksson, Per LU ; Ohlsson, Sophie LU orcid ; Rantapää-Dahlqvist, Solbritt and Dahlqvist, Johanna (2025) In Frontiers in Immunology 16.
Abstract

OBJECTIVE: Despite recent advances, the pathophysiological mechanisms underlying anti-neutrophil cytoplasmic antibody (ANCA)-associated vasculitides (AAV) remain incompletely understood, and comparative proteomic analyses of AAV subtypes are lacking. This study aimed to identify key molecular signaling pathways activated in AAV and to elucidate molecular distinctions between AAV with proteinase 3 ANCA (PR3-AAV) and AAV with myeloperoxidase ANCA (MPO-AAV).

METHODS: Plasma samples from 41 cases with active PR3-AAV, 24 with active MPO-AAV and 138 population controls were analyzed for 185 proteins using proximity extension assay and Luminex. Differential expression was assessed between PR3-AAV, MPO-AAV and controls using univariate... (More)

OBJECTIVE: Despite recent advances, the pathophysiological mechanisms underlying anti-neutrophil cytoplasmic antibody (ANCA)-associated vasculitides (AAV) remain incompletely understood, and comparative proteomic analyses of AAV subtypes are lacking. This study aimed to identify key molecular signaling pathways activated in AAV and to elucidate molecular distinctions between AAV with proteinase 3 ANCA (PR3-AAV) and AAV with myeloperoxidase ANCA (MPO-AAV).

METHODS: Plasma samples from 41 cases with active PR3-AAV, 24 with active MPO-AAV and 138 population controls were analyzed for 185 proteins using proximity extension assay and Luminex. Differential expression was assessed between PR3-AAV, MPO-AAV and controls using univariate and partial least squares discriminant analyses. Protein-protein interactions and pathway enrichment were explored using STRING and Cytoscape databases.

RESULTS: Compared with controls, 31 proteins were significantly upregulated in PR3-AAV and 29 in MPO-AAV; 18 were shared, whereas 13 and 11 were specific to PR3-AAV and MPO-AAV, respectively. Shared proteins were enriched in general immune pathways, including IL-6 signaling. AAV subgroup-specific proteins were combined with proteins differentiating between PR3-AAV and MPO-AAV in a direct comparison. MMP-1, MMP-9, HGF, and OSM were uniquely upregulated in PR3-AAV, while TNF, TNF-R1/R2, TNFRSF14, and TNFRSF9 were prominent in MPO-AAV. Functional enrichment analyses underscored STAT3 signaling in PR3-AAV and TNF signaling in MPO-AAV.

CONCLUSIONS: This study identifies distinct and shared signaling pathways in PR3-AAV and MPO-AAV, highlighting STAT3 and TNF pathways as potential subtype-specific mechanisms. These findings offer insight into AAV pathogenesis and may guide the development of more targeted, less toxic treatments tailored to AAV subtypes.

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; ; ; ; ; ; ; ; and
organization
publishing date
type
Contribution to journal
publication status
published
subject
keywords
Humans, Signal Transduction/immunology, Myeloblastin/immunology, Peroxidase/immunology, Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis/immunology, Male, Female, Proteome/metabolism, Middle Aged, Antibodies, Antineutrophil Cytoplasmic/immunology, Aged, Proteomics/methods, Adult, Biomarkers/blood, Protein Interaction Maps
in
Frontiers in Immunology
volume
16
article number
1600754
publisher
Frontiers Media S. A.
external identifiers
  • pmid:40607391
ISSN
1664-3224
DOI
10.3389/fimmu.2025.1600754
language
English
LU publication?
yes
additional info
Copyright © 2025 Hellbacher, van Hoef, Johansson, Knight, Gunnarsson, Bruchfeld, Eriksson, Ohlsson, Rantapää-Dahlqvist and Dahlqvist.
id
4bbdfa44-3973-443f-817f-d4bee513f432
date added to LUP
2025-07-07 14:23:36
date last changed
2025-07-08 11:59:08
@article{4bbdfa44-3973-443f-817f-d4bee513f432,
  abstract     = {{<p>OBJECTIVE: Despite recent advances, the pathophysiological mechanisms underlying anti-neutrophil cytoplasmic antibody (ANCA)-associated vasculitides (AAV) remain incompletely understood, and comparative proteomic analyses of AAV subtypes are lacking. This study aimed to identify key molecular signaling pathways activated in AAV and to elucidate molecular distinctions between AAV with proteinase 3 ANCA (PR3-AAV) and AAV with myeloperoxidase ANCA (MPO-AAV).</p><p>METHODS: Plasma samples from 41 cases with active PR3-AAV, 24 with active MPO-AAV and 138 population controls were analyzed for 185 proteins using proximity extension assay and Luminex. Differential expression was assessed between PR3-AAV, MPO-AAV and controls using univariate and partial least squares discriminant analyses. Protein-protein interactions and pathway enrichment were explored using STRING and Cytoscape databases.</p><p>RESULTS: Compared with controls, 31 proteins were significantly upregulated in PR3-AAV and 29 in MPO-AAV; 18 were shared, whereas 13 and 11 were specific to PR3-AAV and MPO-AAV, respectively. Shared proteins were enriched in general immune pathways, including IL-6 signaling. AAV subgroup-specific proteins were combined with proteins differentiating between PR3-AAV and MPO-AAV in a direct comparison. MMP-1, MMP-9, HGF, and OSM were uniquely upregulated in PR3-AAV, while TNF, TNF-R1/R2, TNFRSF14, and TNFRSF9 were prominent in MPO-AAV. Functional enrichment analyses underscored STAT3 signaling in PR3-AAV and TNF signaling in MPO-AAV.</p><p>CONCLUSIONS: This study identifies distinct and shared signaling pathways in PR3-AAV and MPO-AAV, highlighting STAT3 and TNF pathways as potential subtype-specific mechanisms. These findings offer insight into AAV pathogenesis and may guide the development of more targeted, less toxic treatments tailored to AAV subtypes.</p>}},
  author       = {{Hellbacher, Erik and van Hoef, Vincent and Johansson, Alina and Knight, Ann and Gunnarsson, Iva and Bruchfeld, Annette and Eriksson, Per and Ohlsson, Sophie and Rantapää-Dahlqvist, Solbritt and Dahlqvist, Johanna}},
  issn         = {{1664-3224}},
  keywords     = {{Humans; Signal Transduction/immunology; Myeloblastin/immunology; Peroxidase/immunology; Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis/immunology; Male; Female; Proteome/metabolism; Middle Aged; Antibodies, Antineutrophil Cytoplasmic/immunology; Aged; Proteomics/methods; Adult; Biomarkers/blood; Protein Interaction Maps}},
  language     = {{eng}},
  publisher    = {{Frontiers Media S. A.}},
  series       = {{Frontiers in Immunology}},
  title        = {{The plasma proteome reveals distinct signaling pathways associated with PR3-ANCA positive and MPO-ANCA positive vasculitis}},
  url          = {{http://dx.doi.org/10.3389/fimmu.2025.1600754}},
  doi          = {{10.3389/fimmu.2025.1600754}},
  volume       = {{16}},
  year         = {{2025}},
}