MuscleAtlasExplorer : a web service for studying gene expression in human skeletal muscle
Asplund, Olof LU ; Rung, Johan ; Groop, Leif LU ; Prasad B, Rashmi LU and Hansson, Ola LU
(2020)
In Database: the journal of biological databases and curation
2020.
- Abstract
MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at... (More)
MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2 (username 'muscle' and password 'explorer' pre-publication).
(Less)
- author
- Asplund, Olof
LU
; Rung, Johan
; Groop, Leif
LU
; Prasad B, Rashmi
LU
and Hansson, Ola
LU
- organization
- publishing date
- 2020-12-18
- type
- Contribution to journal
- publication status
- published
- subject
- keywords
- database tool
- in
- Database: the journal of biological databases and curation
- volume
- 2020
- article number
- baaa111
- publisher
- Oxford University Press
- external identifiers
-
- pmid:33338203
- scopus:85098743695
- ISSN
- 1758-0463
- DOI
- 10.1093/database/baaa111
- language
- English
- LU publication?
- yes
- additional info
- © The Author(s) 2020. Published by Oxford University Press.
- id
- d88902c0-7f0e-41e5-bc33-394119107304
- date added to LUP
- 2020-12-23 22:18:08
- date last changed
- 2024-07-11 05:58:12
@article{d88902c0-7f0e-41e5-bc33-394119107304,
abstract = {{<p>MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2 (username 'muscle' and password 'explorer' pre-publication).</p>}},
author = {{Asplund, Olof and Rung, Johan and Groop, Leif and Prasad B, Rashmi and Hansson, Ola}},
issn = {{1758-0463}},
keywords = {{database tool}},
language = {{eng}},
month = {{12}},
publisher = {{Oxford University Press}},
series = {{Database: the journal of biological databases and curation}},
title = {{MuscleAtlasExplorer : a web service for studying gene expression in human skeletal muscle}},
url = {{http://dx.doi.org/10.1093/database/baaa111}},
doi = {{10.1093/database/baaa111}},
volume = {{2020}},
year = {{2020}},
}