Protein Evolution

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2025
Mark The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes
Odai, Roni ^LU ; Leemann, Michèle ; Al-Murad, Tamim ; Abdullah, Minhal ^LU ; Shyrokova, Lena ^LU ; Tenson, Tanel ; Hauryliuk, Vasili ^LU ; Durairaj, Janani ; Pereira, Joana ^LU and Atkinson, Gemma C ^LU (2025) In Science Advances 11(40). p.1-14
- Contribution to journal › Article
Mark LoVis4u : a locus visualization tool for comparative genomics and coverage profiles
Egorov, Artyom A. ^LU and Atkinson, Gemma C. ^LU (2025) In NAR Genomics and Bioinformatics 7(1).
- Contribution to journal › Article
Mark Mechanisms of neutralization of toxSAS from toxin-antitoxin modules
Dominguez-Molina, Lucia ; Kurata, Tatsuaki ^LU ; Cepauskas, Albinas ; Echemendia-Blanco, Dannele ; Zedek, Safia ; Talavera-Perez, Ariel ; Atkinson, Gemma C ^LU ; Hauryliuk, Vasili ^LU and Garcia-Pino, Abel (2025) In Nature Chemical Biology 21. p.182-192
- Contribution to journal › Article
2024
Mark Structural basis of Cfr-mediated antimicrobial resistance and mechanisms to evade it
Aleksandrova, Elena V. ; Wu, Kelvin J.Y. ; Tresco, Ben I.C. ; Syroegin, Egor A. ; Killeavy, Erin E. ; Balasanyants, Samson M. ; Svetlov, Maxim S. ; Gregory, Steven T. ; Atkinson, Gemma C. ^LU and Myers, Andrew G. , et al. (2024) In Nature Chemical Biology 20(7). p.867-876
- Contribution to journal › Article
Mark Peptidyl-tRNA hydrolase is the nascent chain release factor in bacterial ribosome-associated quality control
Svetlov, Maxim S. ; Dunand, Clémence F. ; Nakamoto, Jose A. ^LU ; Atkinson, Gemma C. ^LU ; Safdari, Haaris A. ; Wilson, Daniel N. ; Vázquez-Laslop, Nora and Mankin, Alexander S. (2024) In Molecular Cell 84(4). p.5-726
- Contribution to journal › Article
Mark Resolution of ribosomal stalling by EF-P and ABCF ATPases YfmR and YkpA/YbiT
Takada, Hiraku ; Fujiwara, Keigo ; Atkinson, Gemma C ^LU ; Chiba, Shinobu and Hauryliuk, Vasili ^LU (2024) In Nucleic Acids Research 52(16). p.9854-9866
- Contribution to journal › Article
Mark Activity, structure, and diversity of Type II proline-rich antimicrobial peptides from insects
Huang, Weiping ; Baliga, Chetana ; Aleksandrova, Elena V. ; Atkinson, Gemma ^LU ; Polikanov, Yury S. ; Vázquez-Laslop, Nora and Mankin, Alexander S. (2024) In EMBO Reports 25(11). p.5194-5211
- Contribution to journal › Article
Mark A Comprehensive Resource for Exploring Antiphage Defense : DefenseFinder Webservice,Wiki and Databases
Tesson, Florian ; Planel, Rémi ; Egorov, Artyom A. ^LU ; Georjon, Héloïse ; Vaysset, Hugo ; Brancotte, Bryan ; Néron, Bertrand ; Mordret, Ernest ; Atkinson, Gemma Catherine ^LU and Bernheim, Aude , et al. (2024) In Peer Community Journal 4.
- Contribution to journal › Article
Mark Structure-functional characterization of Lactococcus AbiA phage defense system
Gapińska, Marta ; Zajko, Weronika ; Skowronek, Krzysztof ; Figiel, Małgorzata ; Krawczyk, Paweł S ; Egorov, Artyom A ^LU ; Dziembowski, Andrzej ; Johansson, Marcus J O ^LU and Nowotny, Marcin (2024) In Nucleic Acids Research 52(8). p.4723-4738
- Contribution to journal › Article
Mark In-depth proteomic analysis and structural modelling of protein-protein interactions identify known and novel molecular binding partners for EMP3 in erythroid cells
Alattar, A G ^LU ; Ghosh, S ^LU ; Chouhan, B ^LU ; Pimkova, K ^LU ; Atkinson, G ^LU ; Flygare, J ^LU ; Hansson, J ^LU ; Storry, J ^LU and Olsson, Martin L ^LU (2024) In Vox Sanguinis 119(S1).
- Contribution to journal › Published meeting abstract

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