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A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

Coignard, Juliette ; Augustinsson, Annelie LU ; Olsson, Håkan LU ; Borg, Åke LU and Antoniou, Antonis C (2021) In Nature Communications 12(1).
Abstract
Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P < 10−8, at 5 loci, which are not associated with risk in the general population.... (More)
Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P < 10−8, at 5 loci, which are not associated with risk in the general population. They include rs60882887 at 11p11.2 where MADD, SP11 and EIF1, genes previously implicated in BC biology, are predicted as potential targets. These findings will contribute towards customising BC polygenic risk scores for BRCA1 and BRCA2 mutation carriers. © 2021, The Author(s). (Less)
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Nature Communications
volume
12
issue
1
article number
1078
publisher
Nature Publishing Group
external identifiers
  • scopus:85101270098
  • pmid:33597508
ISSN
2041-1723
DOI
10.1038/s41467-020-20496-3
language
English
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yes
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20c87f8d-a561-40fb-9e40-f2055eec8d82
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2021-03-08 10:53:02
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2021-03-09 03:01:58
@article{20c87f8d-a561-40fb-9e40-f2055eec8d82,
  abstract     = {Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P &lt; 10−8, at 5 loci, which are not associated with risk in the general population. They include rs60882887 at 11p11.2 where MADD, SP11 and EIF1, genes previously implicated in BC biology, are predicted as potential targets. These findings will contribute towards customising BC polygenic risk scores for BRCA1 and BRCA2 mutation carriers. © 2021, The Author(s).},
  author       = {Coignard, Juliette and Augustinsson, Annelie and Olsson, Håkan and Borg, Åke and Antoniou, Antonis C},
  issn         = {2041-1723},
  language     = {eng},
  number       = {1},
  publisher    = {Nature Publishing Group},
  series       = {Nature Communications},
  title        = {A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers},
  url          = {http://dx.doi.org/10.1038/s41467-020-20496-3},
  doi          = {10.1038/s41467-020-20496-3},
  volume       = {12},
  year         = {2021},
}