Advanced

MuscleAtlasExplorer : a web service for studying gene expression in human skeletal muscle

Asplund, Olof LU ; Rung, Johan ; Groop, Leif LU ; Prasad B, Rashmi LU and Hansson, Ola LU (2020) In Database : the journal of biological databases and curation 2020.
Abstract

MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at... (More)

MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2 (username 'muscle' and password 'explorer' pre-publication).

(Less)
Please use this url to cite or link to this publication:
author
; ; ; and
organization
publishing date
type
Contribution to journal
publication status
published
subject
keywords
database tool
in
Database : the journal of biological databases and curation
volume
2020
article number
baaa111
publisher
Oxford University Press
external identifiers
  • pmid:33338203
  • scopus:85098743695
ISSN
1758-0463
DOI
10.1093/database/baaa111
language
English
LU publication?
yes
additional info
© The Author(s) 2020. Published by Oxford University Press.
id
d88902c0-7f0e-41e5-bc33-394119107304
date added to LUP
2020-12-23 22:18:08
date last changed
2021-03-03 05:14:42
@article{d88902c0-7f0e-41e5-bc33-394119107304,
  abstract     = {<p>MuscleAtlasExplorer is a freely available web application that allows for the exploration of gene expression data from human skeletal muscle. It draws from an extensive publicly available dataset of 1654 skeletal muscle expression microarray samples. Detailed, manually curated, patient phenotype data, with information such as age, sex, BMI and disease status, are combined with skeletal muscle gene expression to provide insights into gene function in skeletal muscle. It aims to facilitate easy exploration of the data using powerful data visualization functions, while allowing for sample selection, in-depth inspection and further analysis using external tools. Availability: MuscleAtlasExplorer is available at https://mae.crc.med.lu.se/mae2 (username 'muscle' and password 'explorer' pre-publication).</p>},
  author       = {Asplund, Olof and Rung, Johan and Groop, Leif and Prasad B, Rashmi and Hansson, Ola},
  issn         = {1758-0463},
  language     = {eng},
  month        = {12},
  publisher    = {Oxford University Press},
  series       = {Database : the journal of biological databases and curation},
  title        = {MuscleAtlasExplorer : a web service for studying gene expression in human skeletal muscle},
  url          = {http://dx.doi.org/10.1093/database/baaa111},
  doi          = {10.1093/database/baaa111},
  volume       = {2020},
  year         = {2020},
}