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2026
Mark Camp : a modular metagenomics analysis system for integrated multistep data exploration
Mak, Lauren ; Tierney, Braden ; Wei, Wei ; Ronkowski, Cynthia ; Toscan, Rodolfo Brizola ; Turhan, Berk ; Toomey, Michael ; Andrade-Martínez, Juan Sebastian ; Fu, Chenlian and Lucaci, Alexander G , et al. (2026) In NAR Genomics and Bioinformatics 8(1).
- Contribution to journal › Article
2025
Mark The fundamentals of eye tracking part 4 : Tools for conducting an eye tracking study
Niehorster, Diederick C ^LU ; Nyström, Marcus ^LU ; Hessels, Roy S ; Andersson, Richard ^LU ; Benjamins, Jeroen S ; Hansen, Dan Witzner and Hooge, Ignace T C ^LU (2025) In Behavior Research Methods 57.
- Contribution to journal › Article
Mark Bayesian network imputation methods applied to multi-omics data identify putative causal relationships in a type 2 diabetes dataset containing incomplete data : An IMI DIRECT Study
Howey, Richard ; Adam, Jonathan ; Adamski, Jerzy ; Atabaki, Natalie N ^LU ; Brunak, Søren ; Chmura, Piotr Jaroslaw ; De Masi, Federico ; Dermitzakis, Emmanouil T ; Fernandez-Tajes, Juan J ^LU and Forgie, Ian M , et al. (2025) In PLoS Genetics 21(7).
- Contribution to journal › Article
Mark Considerations and Software for Successful Immune Cell Deconvolution Using Proteomics Data
Zamore, Måns ^LU ; Junior, Sergio Mosquim ^LU ; Andree, Sebastian L ^LU ; Altunbulakli, Can ^LU ; Lindstedt, Malin ^LU and Levander, Fredrik ^LU (2025) In Journal of Proteome Research 24(8). p.3751-3761
- Contribution to journal › Article
Mark AnimalTA : A Step-by-Step Tutorial
Chiara, Violette ^LU and Kim, Sin Yeon (2025) In Methods in Molecular Biology 2915. p.315-331
- Chapter in Book/Report/Conference proceeding › Book chapter
Mark Mapping disease-environment connections reported in scientific literature at scale with EasyNER
Aasa, Carl ; Boyd, Emily ^LU and Aits, Sonja ^LU (2025) EurIPS 2025
- Contribution to conference › Paper, not in proceeding
2024
Mark BioEncoder : A metric learning toolkit for comparative organismal biology
Lürig, Moritz D ^LU ; Di Martino, Emanuela and Porto, Arthur (2024) In Ecology Letters 27(8).
- Contribution to journal › Article
Mark Netquant2 : automated web-based quantification of neutrophil extracellular traps from fluorescence microscopy
Kumra Ahnlide, Johannes ^LU ; Thelaus, Louise ^LU ; Kahn, Fredrik ^LU ; van Breda, Shane and Nordenfelt, Pontus ^LU (2024) In Frontiers in Immunology 15.
- Contribution to journal › Article
Mark Using residue interaction networks to understand protein function and evolution and to engineer new proteins
Yehorova, Dariia ; Di Geronimo, Bruno ; Robinson, Michael ; Kasson, Peter M and Kamerlin, Shina C L (2024) In Current Opinion in Structural Biology 89.
- Contribution to journal › Scientific review
Mark EasyNER: A Customizable and Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical Text [Software]
Ahmed, Rafsan ^LU ; Aits, Sonja ^LU ; Kazemi Rashed, Salma ^LU ; Nugues, Pierre ^LU ; Lamarca, Antton ^LU ; Berntsson, Peter ; Skafte, Alexander ; Klang, Marcus ^LU ; Olde, Ola and Barvesten, Adam , et al. (2024)
- Non-textual form › Software

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