Protein Evolution

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2025
Mark The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes
Odai, Roni ^LU ; Leemann, Michèle ; Al-Murad, Tamim ; Abdullah, Minhal ^LU ; Shyrokova, Lena ^LU ; Tenson, Tanel ; Hauryliuk, Vasili ^LU ; Durairaj, Janani ; Pereira, Joana ^LU and Atkinson, Gemma C ^LU (2025) In Science Advances 11(40). p.1-14
- Contribution to journal › Article
Mark Evidence for a functional interaction between yeast Pol ε and PCNA in vivo
Singh, Noopur ; Odai, Roni ^LU ; Persson, Ulf ^LU ; Bylund, Göran O. ^LU ; Obi, Ikenna ; Sabouri, Nasim ; Atkinson, Gemma C. ^LU and Johansson, Erik ^LU (2025) In Nucleic Acids Research 53(22).
- Contribution to journal › Article
Mark Characterization of five environmental phages infecting Escherichia coli K-12 isolated during a phage biology training course.
Shyrokova, Lena ^LU ; Egorov, Artyom A ^LU ; Cole, Astrid ; Duque-Pedraza, Julian J ^LU ; Tyagi, Anu ^LU ; Ernits, Karin ^LU ; Mets, Toomas ^LU ; Kurata, Tatsuaki ^LU ; Juozapaitis, Jonas and Yang, Alessio Ling Jie , et al. (2025) In Microbiology spectrum 13(12).
- Contribution to journal › Article
Mark Mechanisms of neutralization of toxSAS from toxin-antitoxin modules
Dominguez-Molina, Lucia ; Kurata, Tatsuaki ^LU ; Cepauskas, Albinas ; Echemendia-Blanco, Dannele ; Zedek, Safia ; Talavera-Perez, Ariel ; Atkinson, Gemma C ^LU ; Hauryliuk, Vasili ^LU and Garcia-Pino, Abel (2025) In Nature Chemical Biology 21. p.182-192
- Contribution to journal › Article
Mark LoVis4u : a locus visualization tool for comparative genomics and coverage profiles
Egorov, Artyom A. ^LU and Atkinson, Gemma C. ^LU (2025) In NAR Genomics and Bioinformatics 7(1).
- Contribution to journal › Article
2024
Mark A role for the S4-domain containing protein YlmH in ribosome-associated quality control in Bacillus subtilis
Takada, Hiraku ; Paternoga, Helge ; Fujiwara, Keigo ; Nakamoto, Jose A ^LU ; Park, Esther N ; Dimitrova-Paternoga, Lyudmila ; Beckert, Bertrand ; Saarma, Merilin ; Tenson, Tanel and Buskirk, Allen R , et al. (2024) In Nucleic Acids Research 52(14).
- Contribution to journal › Article
Mark Structural basis of Cfr-mediated antimicrobial resistance and mechanisms to evade it
Aleksandrova, Elena V. ; Wu, Kelvin J.Y. ; Tresco, Ben I.C. ; Syroegin, Egor A. ; Killeavy, Erin E. ; Balasanyants, Samson M. ; Svetlov, Maxim S. ; Gregory, Steven T. ; Atkinson, Gemma C. ^LU and Myers, Andrew G. , et al. (2024) In Nature Chemical Biology 20(7). p.867-876
- Contribution to journal › Article
Mark Resolution of ribosomal stalling by EF-P and ABCF ATPases YfmR and YkpA/YbiT
Takada, Hiraku ; Fujiwara, Keigo ; Atkinson, Gemma C ^LU ; Chiba, Shinobu and Hauryliuk, Vasili ^LU (2024) In Nucleic Acids Research 52(16). p.9854-9866
- Contribution to journal › Article
Mark Structure-functional characterization of Lactococcus AbiA phage defense system
Gapińska, Marta ; Zajko, Weronika ; Skowronek, Krzysztof ; Figiel, Małgorzata ; Krawczyk, Paweł S ; Egorov, Artyom A ^LU ; Dziembowski, Andrzej ; Johansson, Marcus J O ^LU and Nowotny, Marcin (2024) In Nucleic Acids Research 52(8). p.4723-4738
- Contribution to journal › Article
Mark Mechanism of phage sensing and restriction by toxin-antitoxin-chaperone systems
Mets, Toomas ^LU ; Kurata, Tatsuaki ^LU ; Ernits, Karin ^LU ; Johansson, Marcus J O ^LU ; Craig, Sophie Z ; Evora, Gabriel Medina ; Buttress, Jessica A ; Odai, Roni ^LU ; Wallant, Kyo Coppieters't and Nakamoto, Jose A ^LU , et al. (2024) In Cell Host and Microbe 32(7). p.8-1073
- Contribution to journal › Article

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