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- 2024
-
Mark
T-cell commitment inheritance—an agent-based multi-scale model
(
- Contribution to journal › Article
-
Mark
Elucidating fungal decomposition of organic matter at sub-micrometer spatial scales using optical photothermal infrared (O-PTIR) microspectroscopy
(
- Contribution to journal › Article
-
Mark
Using quantum annealing to design lattice proteins
(
- Contribution to journal › Article
- 2022
-
Mark
Folding lattice proteins with quantum annealing
(
- Contribution to journal › Article
- 2021
-
Mark
Multi-scale Dynamical Modeling of T Cell Development from an Early Thymic Progenitor State to Lineage Commitment
(
- Contribution to journal › Article
- 2020
-
Mark
Regulation of fungal decomposition at single-cell level
(
- Contribution to journal › Article
-
Mark
OCTAVVS : A graphical toolbox for high-throughput preprocessing and analysis of vibrational spectroscopy imaging data
(
- Contribution to journal › Article
- 2019
-
Mark
Kinetic models of hematopoietic differentiation
(
- Contribution to journal › Scientific review
- 2018
-
Mark
Fenton reaction facilitates organic nitrogen acquisition by an ectomycorrhizal fungus
(
- Contribution to journal › Article
-
Mark
Haematopoietic stem cells : Entropic landscapes of differentiation
(
- Contribution to journal › Article
- 2017
-
Mark
A deterministic method for estimating free energy genetic network landscapes with applications to cell commitment and reprogramming paths
(
- Contribution to journal › Article
-
Mark
Different reprogramming propensities in plants and mammals: Are small variations in the core network wirings responsible?
2017) In PLoS ONE(
- Contribution to journal › Article
- 2016
-
Mark
Selection Shapes Transcriptional Logic and Regulatory Specialization in Genetic Networks.
(
- Contribution to journal › Article
-
Mark
A somatic mutation of GFI1B identified in leukemia alters cell fate via a SPI1 (PU.1) centered genetic regulatory network.
(
- Contribution to journal › Article
-
Mark
Irreversibility of t-cell specification : Insights from computational modelling of a minimal network architecture
(
- Contribution to journal › Article
-
Mark
Lundamodellen för högenergikollisioner : Om den framgångsrika Lundamodellen för högenergikollisioner – teoretiska idéer möter en experimentell verklighet.
2016)(
- Chapter in Book/Report/Conference proceeding › Book chapter
- 2015
-
Mark
Single-Cell Network Analysis Identifies DDIT3 as a Nodal Lineage Regulator in Hematopoiesis.
(
- Contribution to journal › Article
-
Mark
Från stamcell till mogen cell-en teoretisk fysikers perspektiv
2015) In Annales Academiae Regiae Scientiarum Upsaliensis / Kungl. Vetenskapssamhällets i Uppsala årsbok 2013-2014(40). p.21-27(
- Contribution to journal › Article
- 2013
-
Mark
Computational modelling of T-cell formation kinetics: output regulated by initial proliferation-linked deferral of developmental competence.
(
- Contribution to journal › Article
-
Mark
Transcriptional regulation of lineage commitment - a stochastic model of cell fate decisions.
(
- Contribution to journal › Article
-
Mark
Dynamic Analysis of Gene Expression and Genome-wide Transcription Factor Binding during Lineage Specification of Multipotent Progenitors
(
- Contribution to journal › Article
-
Mark
Dynamical modelling of haematopoiesis: an integrated view over the system in homeostasis and under perturbation.
(
- Contribution to journal › Article
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2013) US8620592(
- Patent › Patent
- 2012
-
Mark
Inferring rules of lineage commitment in haematopoiesis
(
- Contribution to journal › Article
-
Mark
Computational multiscale modeling of embryo development.
2012) In Current Opinion in Genetics & Development(
- Contribution to journal › Article
-
Mark
Probing the role of stochasticity in a model of the embryonic stem cell - heterogeneous gene expression and reprogramming efficiency
(
- Contribution to journal › Article
-
Mark
Sets of probes and primers for the diagnosis of select cancers
2012) US8263759(
- Patent › Patent
- 2011
-
Mark
Simulating the Mammalian blastocyst - molecular and mechanical interactions pattern the embryo.
(
- Contribution to journal › Article
-
Mark
Molecular serum portraits in patients with primary breast cancer predict the development of distant metastases.
(
- Contribution to journal › Article
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2011) US8065092(
- Patent › Patent
- 2010
-
Mark
Identification of uniquely expressed transcription factors in highly purified B-cell lymphoma samples.
(
- Contribution to journal › Article
-
Mark
Selections of genes and methods of using the same for diagnosis and for targeting the therapy of select cancers
2010) US7655397(
- Patent › Patent
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2010) US7774143(
- Patent › Patent
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2010) US7783431(
- Patent › Patent
- 2009
-
Mark
Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility
(
- Contribution to journal › Article
-
Mark
Stem Cell States, Fates, and the Rules of Attraction
(
- Contribution to journal › Scientific review
-
Mark
Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.
(
- Contribution to journal › Article
- 2008
-
Mark
Gene expression profiling in primary breast cancer distinguishes patients developing local recurrence after breast conservation surgery with or without postoperative radiotherapy
(
- Contribution to journal › Article
-
Mark
Detection of pancreatic cancer using antibody microarray-based serum protein profiling
(
- Contribution to journal › Article
-
Mark
A computational model for understanding stem cell, trophectoderm and endoderm lineage determination
(
- Contribution to journal › Article
- 2007
-
Mark
Estrogen receptor beta expression is associated with tamoxifen response in ER alpha-negative breast carcinoma
(
- Contribution to journal › Article
-
Mark
Hans-Uno Bengtsson - Docent i teoretisk fysik och folkbildare, dog den 18 maj 2007, 54 år gammal
2007)(
- Other contribution › Miscellaneous
-
Mark
Is Transcriptional Regulation of Metabolic Pathways and Optimal Strategy for Fitness?
(
- Contribution to journal › Article
-
Mark
Recombinant antibdy microarray based oncoproteomics detects cancer and defines a predictor of survival for pancreatic carcinoma
(
- Contribution to journal › Published meeting abstract
- 2006
-
Mark
Gene expression profilers and conventional clinical markers to predict distant recurrences for premenopausal breast cancer patients after adjuvant chemotherapy.
(
- Contribution to journal › Article
-
Mark
Transcriptional dynamics of the embryonic stem cell switch
(
- Contribution to journal › Article
-
Mark
A rate equation approach to elucidate the kinetics and robustness of the TGF-beta pathway
(
- Contribution to journal › Article
- 2005
-
Mark
Signal transduction pathway profiling of individual tumor samples
(
- Contribution to journal › Article
-
Mark
Large-scale Tumor Analysis For Biomarker Discovery
2005) HUPO 4th annual world congress, 2005(
- Contribution to conference › Abstract
-
Mark
Method for protein structure alignment
2005) US6859736(
- Patent › Patent
- 2004
-
Mark
Genetic networks with canalyzing Boolean rules are always stable
(
- Contribution to journal › Article
-
Mark
"Good Old" clinical markers have similar power in breast cancer prognosis as microarray gene expression profilers.
(
- Contribution to journal › Article
-
Mark
Predicting continuous values of prognostic markers in breast cancer from microarray gene expression profiles.
(
- Contribution to journal › Article
-
Mark
Genomic signal processing - Editorial
(
- Contribution to journal › Debate/Note/Editorial
- 2003
-
Mark
Random Boolean network models and the yeast transcriptional network
(
- Contribution to journal › Article
-
Mark
Predicting the future of breast cancer.
(
- Contribution to journal › Letter
-
Mark
Potential for Dramatic Improvement in Sequence Alignment against Structures of Remote Homologous Proteins by Extracting Structural Information from Multiple Structure Alignment.
(
- Contribution to journal › Article
-
Mark
Microarray-based cancer diagnosis with artificial neural networks
(
- Contribution to journal › Scientific review
-
Mark
Matching protein structures with fuzzy alignments
(
- Contribution to journal › Article
-
Mark
Expression profiling to predict outcome in breast cancer: the influence of sample selection
(
- Contribution to journal › Article
-
Mark
Analyzing tumor gene expression profiles
(
- Contribution to journal › Article
-
Mark
RNA analysis of B cell lines arrested at defined stages of differentiation allows for an approximation of gene expression patterns during B cell development.
(
- Contribution to journal › Article
-
Mark
Computational biology -- opportunities and challenges for theoretical physicists
2003)(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
- 2002
-
Mark
Analyzing array data using supervised methods
(
- Contribution to journal › Scientific review
-
Mark
Bioarray software environment: a platform for comprehensive management and analysis of microarray data
(
- Contribution to journal › Article
-
Mark
Neural Optimization
2002) p.822-827(
- Chapter in Book/Report/Conference proceeding › Book chapter
- 2001
-
Mark
Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks
(
- Contribution to journal › Article
-
Mark
Topological properties of citation and metabolic networks
(
- Contribution to journal › Article
-
Mark
Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns
(
- Contribution to journal › Article
-
Mark
Using hidden Markov models to characterize disease trajectories
2001) p.324-326(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
An efficient mean field approach to the set covering problem
(
- Contribution to journal › Article
- 2000
-
Mark
Local routing algorithms based on Potts neural networks.
(
- Contribution to journal › Article
-
Mark
Clustering ECG complexes using Hermite functions and self-organizing maps
(
- Contribution to journal › Article
-
Mark
Folding and design in coarse-grained protein models
(
- Contribution to journal › Article
-
Mark
Airline crew scheduling using Potts mean field techniques
(
- Contribution to journal › Article
-
Mark
A novel approach to structure alignment
2000) In LU TP 00-07(
- Book/Report › Report
- 1999
-
Mark
A confident decision support system for interpreting electrocardiograms
(
- Contribution to journal › Article
-
Mark
Design of sequences with good folding properties in coarse-grained protein models
(
- Contribution to journal › Article
- 1998
-
Mark
A Potts Neuron Approach to Communication Routing
(
- Contribution to journal › Article
-
Mark
Intelligent computer reporting 'lack of experience' : A confidence measure for decision support systems
(
- Contribution to journal › Article
-
Mark
Monte Carlo procedure for protein design
(
- Contribution to journal › Article
- 1997
-
Mark
Automated interpretation of myocardial SPECT perfusion images using artificial neural networks
(
- Contribution to journal › Article
-
Mark
The electrostatic persistence length calculated from Monte Carlo, variational and perturbation methods
(
- Contribution to journal › Article
-
Mark
Airline Crew Scheduling with Potts Neurons
(
- Contribution to journal › Article
-
Mark
Identification of amino acid sequences with good folding properties in an off-lattice model
(
- Contribution to journal › Article
-
Mark
Local interactions and protein folding : A three-dimensional off-lattice approach
(
- Contribution to journal › Article
- 1996
-
Mark
Detection of frequently overlooked electrocardiographic lead reversals using artificial neural networks
(
- Contribution to journal › Article
-
Mark
Agreement between artificial neural networks and experienced electrocardiographer on electrocardiographic diagnosis of healed myocardial infarction
(
- Contribution to journal › Article
-
Mark
Titrating polyelectrolytes - Variational calculations and Monte Carlo simulations
(
- Contribution to journal › Article
-
Mark
Variational approach for minimizing Lennard-Jones energies
1996) In Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics 53(2). p.1725-1731(
- Contribution to journal › Article
-
Mark
Scaling and scale breaking in polyelectrolytes
(
- Contribution to journal › Article
-
Mark
Blocking technique for emulating very large polyelectrolytes
(
- Contribution to journal › Article
-
Mark
A Monte Carlo study of titrating polyelectrolytes
(
- Contribution to journal › Article
-
Mark
Evidence for nonrandom hydrophobicity structures in protein chains
(
- Contribution to journal › Article
- 1995
-
Mark
Artificial neural networks for recognition of electrocardiographic lead reversal
(
- Contribution to journal › Article
-
Mark
Assessing cereal grain quality with a fully automated instrument using artificial neural network processing of digitized color video images
(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
-
Mark
Determining Dependency structures and estimating nonlinear regression errors without doing regression
(
- Contribution to journal › Article
-
Mark
Variational approach to the structure and thermodynamics of linear polyelectrolytes with Coulomb and screened Coulomb interactions
(
- Contribution to journal › Article
- 1994
-
Mark
Predicting System loads with Artificial Neural Networks : Method and Result from "the Great Energy Predictor Shootout"
1994) p.1063-1074(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
-
Mark
Delta 2.0 - A program for finding dependencies in tables of data
(
- Contribution to journal › Article