Bioinformatics

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2023
Mark aMeta : an accurate and memory-efficient ancient metagenomic profiling workflow
Pochon, Zoé ; Bergfeldt, Nora ; Kırdök, Emrah ; Vicente, Mário ; Naidoo, Thijessen ; van der Valk, Tom ; Altınışık, N. Ezgi ; Krzewińska, Maja ; Dalén, Love ^LU and Götherström, Anders , et al. (2023) In Genome Biology 24.
- Contribution to journal › Article
2022
Mark Genome-wide identification of the genetic basis of amyotrophic lateral sclerosis
Zhang, Sai ; Cooper-Knock, Johnathan ; Weimer, Annika K ; Shi, Minyi ; Moll, Tobias ; Marshall, Jack N G ; Harvey, Calum ; Nezhad, Helia Ghahremani ; Franklin, John and Souza, Cleide Dos Santos , et al. (2022) In Neuron 110(6). p.11-1008
- Contribution to journal › Article
Mark Microbial functional genes influenced by short-term experimental drought across European agricultural fields
Kozjek, Katja ^LU ; Mano, Lokesh ^LU ; Ahrén, Dag ^LU and Hedlund, Katarina ^LU (2022) In Soil Biology and Biochemistry 168.
- Contribution to journal › Article
Mark A history of the MetaSUB consortium : Tracking urban microbes around the globe
Ryon, Krista A. ; Tierney, Braden T. ; Frolova, Alina ; Kahles, Andre ; Desnues, Christelle ; Ouzounis, Christos ; Gibas, Cynthis ; Bezdan, Daniela ; Deng, Youping and He, Ding , et al. (2022) In iScience 25(11).
- Contribution to journal › Debate/Note/Editorial
Mark Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated
Elhaik, Eran ^LU (2022) In Scientific Reports 12.
- Contribution to journal › Article
Mark Temporal population structure, a genetic dating method for ancient Eurasian genomes from the past 10,000 years
Behnamian, Sara ^LU ; Esposito, Umberto ; Holland, Grace ; Alshehab, Ghadeer ; Dobre, Ann M ; Pirooznia, Mehdi ; Brimacombe, Conrad S and Elhaik, Eran ^LU (2022) In Cell reports methods 2(8).
- Contribution to journal › Article
Mark Evolutionary consequences of genomic deletions and insertions in the woolly mammoth genome
van der Valk, Tom ; Dehasque, Marianne ; Chacón-Duque, J Camilo ; Oskolkov, Nikolay ^LU ; Vartanyan, Sergey ; Heintzman, Peter D ; Pečnerová, Patrícia ^LU ; Díez-Del-Molino, David and Dalén, Love ^LU (2022) In iScience 25(8).
- Contribution to journal › Article
Mark High-throughput muscle fiber typing from RNA sequencing data
Oskolkov, Nikolay ^LU ; Santel, Malgorzata ; Parikh, Hemang M. ^LU ; Ekström, Ola ^LU ; Camp, Gray J. ; Miyamoto-Mikami, Eri ; Ström, Kristoffer ^LU ; Mir, Bilal Ahmad ^LU ; Kryvokhyzha, Dmytro ^LU and Lehtovirta, Mikko ^LU , et al. (2022) In Skeletal Muscle 12. p.1-9
- Contribution to journal › Article
Mark Mercury–Selenium Accumulation Patterns in Muscle Tissue of Two Freshwater Fish Species, Eurasian Perch (Perca fluviatilis) and Vendace (Coregonus albula)
Regnell, Olof ^LU ; Tesson, Sylvie V.M. ^LU ; Oskolkov, Nikolay ^LU and Nerentorp, Michelle (2022) In Water, Air, and Soil Pollution 233(7).
- Contribution to journal › Article
Mark App-based COVID-19 syndromic surveillance and prediction of hospital admissions in COVID Symptom Study Sweden
Kennedy, Beatrice ; Fitipaldi, Hugo ^LU ; Hammar, Ulf ; Maziarz, Marlena ^LU ; Tsereteli, Neli ^LU ; Oskolkov, Nikolay ^LU ; Varotsis, Georgios ; Franks, Camilla A ^LU ; Nguyen, Diem and Spiliopoulos, Lampros ^LU , et al. (2022) In Nature Communications 13(1).
- Contribution to journal › Article