Jari Häkkinen

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2018
Mark Abstract P2-02-09: Breast cancer subtype distribution and circulating tumor DNA in response to neoadjuvant chemotherapy: Experiences from a preoperative cohort within SCAN-B
Loman, Niklas ^LU ; Chen, Yilun ^LU ; Aaltonen, Kristina ^LU ; Brueffer, Christian ^LU ; George, Anthony ^LU ; Zander, Lina ; Vallon-Christersson, Johan ^LU ; Häkkinen, Jari ^LU ; Förnvik, Daniel ^LU and Rigo, Robert ^LU , et al. (2018) San Antonio Breast Cancer Symposium, 2017 In Cancer research. Supplement 78(4).
- Contribution to journal › Published meeting abstract
Mark Multidimensional transcriptomics provides detailed information about immune cell distribution an identity in HER2+ breast tumors
Salmén, Fredrik ; Vickovic, Sanja ; Larsson, Ludvig ; Stenbeck, Linnea ; Vallon-Christersson, Johan ^LU ; Ehinger, Anna ^LU ; Häkkinen, Jari ^LU ; Borg, Åke ^LU ; Frisén, Jonas and Stahl, Patrik , et al. (2018) In BioRxiv
- Working paper/Preprint › Preprint in preprint archive
2017
Mark Frequent miRNA-convergent fusion gene events in breast cancer
Persson, Helena ^LU ; Søkilde, Rolf ^LU ; Häkkinen, Jari ^LU ; Pirona, Anna Chiara ; Vallon-Christersson, Johan ^LU ; Kvist, Anders ^LU ; Mertens, Fredrik ^LU ; Borg, Åke ^LU ; Mitelman, Felix ^LU and Höglund, Mattias ^LU , et al. (2017) In Nature Communications 8(1).
- Contribution to journal › Article
Mark Myoepithelium assessment with p63 immunostaining in formalinfixed paraffin-embedded breast cancer tissue pre-treated with RNA-later
Ehinger, Anna ^LU ; Remse, Inger ^LU ; Lövgren, Kristina ^LU ; Hegardt, Cecilia ^LU ; Häkkinen, Jari ^LU ; Saal, Lao ^LU ; Vallon-Christersson, Johan ^LU and Borg, Åke ^LU (2017) 29th European Congress of Pathology In Virchows Archiv 471(Supplement 1). p.299-299
- Contribution to journal › Published meeting abstract
Mark Abstract P1-07-17: The SCAN-B study: 5-year summary of a large-scale population-based prospective breast cancer translational genomics platform covering a wide geography of Sweden (NCT02306096)
Saal, Lao ^LU ; Hegardt, Cecilia ^LU ; Vallon-Christersson, Johan ^LU ; Häkkinen, Jari ^LU ; Ehinger, Anna ^LU ; Manjer, Jonas ^LU ; Larsson, Christer ^LU ; Loman, Niklas ^LU ; Rydén, Lisa ^LU and Malmberg, Martin ^LU , et al. (2017) San Antonio Breast Cancer Symposium, 2016 In Cancer Research 77(4 Suppl).
- Contribution to journal › Published meeting abstract
2016
Mark Spatial Transcriptomics. Digital Pathology to Investigate Intratumor Heterogeneity in Breast Cancer.
Salmén, Fredrik ; Vickovic, Sanja ; Jemt, Anders ; Bergenstråhle, Joseph ; Fernandez, José ; Mollbrink, Annelie ; Vallon-Christersson, Johan ^LU ; Staaf, Johan ^LU ; Häkkinen, Jari ^LU and Ehinger, Anna ^LU , et al. (2016) AGBT Advances in Genome Biology and Technology meeting.
- Contribution to conference › Poster
Mark Targeted sequencing of BRCA1 and BRCA2 across a large unselected breast cancer cohort suggests that one-third of mutations are somatic
Winter, C ^LU ; Nilsson, M P ^LU ; Olsson, E ^LU ; George, A M ^LU ; Chen, Y ^LU ; Kvist, A ^LU ; Törngren, T ^LU ; Vallon-Christersson, J ^LU ; Hegardt, C ^LU and Häkkinen, J ^LU , et al. (2016) In Annals of Oncology 27(8). p.8-1532
- Contribution to journal › Article
Mark Implementation of an Open Source Software solution for Laboratory Information Management and automated RNAseq data analysis in a large-scale Cancer Genomics initiative using BASE with extension package Reggie.
Häkkinen, Jari ^LU ; Nordborg, Nicklas ^LU ; Månsson, Olle ^LU and Vallon-Christersson, Johan ^LU (2016)
- Working paper/Preprint › Preprint in preprint archive
2015
Mark The Sweden Cancerome Analysis Network - Breast (SCAN-B) Initiative: a large-scale multicenter infrastructure towards implementation of breast cancer genomic analyses in the clinical routine.
Saal, Lao ^LU ; Vallon-Christersson, Johan ^LU ; Häkkinen, Jari ^LU ; Hegardt, Cecilia ^LU ; Grabau, Dorthe ^LU ; Winter, Christof ^LU ; Brueffer, Christian ^LU ; Tang, Man-Hung Eric ^LU ; Reuterswärd, Christel ^LU and Schulz, Ralph ^LU , et al. (2015) In Genome Medicine 7(1).
- Contribution to journal › Article
2014
Mark Molecular and genetic diversity in the metastatic process of melanoma.
Harbst, Katja ^LU ; Lauss, Martin ^LU ; Cirenajwis, Helena ^LU ; Winter, Christof ^LU ; Howlin, Jillian ^LU ; Törngren, Therese ^LU ; Kvist, Anders ^LU ; Nodin, Björn ^LU ; Olsson, Eleonor ^LU and Häkkinen, Jari ^LU , et al. (2014) In Journal of Pathology 233(1). p.39-50
- Contribution to journal › Article

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