Bioinformatics

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2024
Mark Phenotypic characterization and candidate gene analysis of a short kernel and brassinosteroid insensitive mutant from hexaploid oat (Avena sativa)
Tsardakas Renhuldt, Nikos ^LU ; Bentzer, Johan ^LU ; Ahrén, Dag ^LU ; Marmon, Sofia ^LU and Sirijovski, Nick ^LU (2024) In Frontiers in Plant Science 15.
- Contribution to journal › Article
Mark Identification of microbial pathogens in Neolithic Scandinavian humans
Bergfeldt, Nora ; Kırdök, Emrah ; Oskolkov, Nikolay ^LU ; Mirabello, Claudio ; Unneberg, Per ; Malmström, Helena ; Fraser, Magdalena ; Sanchez-Quinto, Federico ; Jorgensen, Roger and Skar, Birgitte , et al. (2024) In Scientific Reports 14.
- Contribution to journal › Article
Mark Predicting type 2 diabetes via machine learning integration of multiple omics from human pancreatic islets
Rönn, Tina ^LU ; Perfilyev, Alexander ^LU ; Oskolkov, Nikolay ^LU and Ling, Charlotte ^LU (2024) In Scientific Reports 14(1).
- Contribution to journal › Article
Mark Population genomic analyses reveal that salinity and geographic isolation drive diversification in a free-living protist
Rengefors, Karin ^LU ; Annenkova, Nataliia ^LU ; Wallenius, Joel ^LU ; Svensson, Marie ^LU ; Kremp, Anke and Ahrén, Dag ^LU (2024) In Scientific Reports 14.
- Contribution to journal › Article
Mark Nigral transcriptomic profiles in Engrailed-1 hemizygous mouse models of Parkinson's disease reveal upregulation of oxidative phosphorylation-related genes associated with delayed dopaminergic neurodegeneration
Belfiori, Lautaro Francisco ^LU ; Dueñas Rey, Alfredo ^LU ; Ralbovszki, Dorottya Mária ; Jimenez-Ferrer, Itzia ; Fredlund, Filip ^LU ; Balikai, Sagar Shivayogi ; Ahrén, Dag ^LU ; Brolin, Kajsa Atterling ^LU and Swanberg, Maria ^LU (2024) In Frontiers in Aging Neuroscience 16.
- Contribution to journal › Article
Mark Exploring different methodological approaches to unlock paleobiodiversity in peat profiles using ancient DNA
Fracasso, Ilaria ; Zaccone, Claudio ; Oskolkov, Nikolay ^LU ; Da Ros, Luca ; Dinella, Anna ; Belelli Marchesini, Luca ; Buzzini, Pietro ; Sannino, Ciro ; Turchetti, Benedetta and Cesco, Stefano , et al. (2024) In Science of the Total Environment 908.
- Contribution to journal › Article
Mark Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
Borry, Maxime ; Forsythe, Adrian ; Andrades Valtueña, Aida ; Hübner, Alexander ; Ibrahim, Anan ; Quagliariello, Andrea ; White, Anna E. ; Kocher, Arthur ; Vågene‬, Åshild J. and Bartholdy, Bjørn Peare , et al. (2024) In F1000Research 12.
- Contribution to journal › Article
Mark Single-cell genomics of a bloom-forming phytoplankton species reveals population genetic structure across continents
Gollnisch, Raphael ^LU ; Ahrén, Dag ^LU and Rengefors, Karin ^LU (2024) In The Isme Journal 18(1).
- Contribution to journal › Article
Mark Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner
ElBeck, Zaher ; Hossain, Mohammad Bakhtiar ; Siga, Humam ; Oskolkov, Nikolay ^LU ; Karlsson, Fredrik ; Lindgren, Julia ; Walentinsson, Anna ; Koppenhöfer, Dominique ; Jarvis, Rebecca and Bürli, Roland , et al. (2024) In Nature Communications 15.
- Contribution to journal › Article
2023
Mark aMeta : an accurate and memory-efficient ancient metagenomic profiling workflow
Pochon, Zoé ; Bergfeldt, Nora ; Kırdök, Emrah ; Vicente, Mário ; Naidoo, Thijessen ; van der Valk, Tom ; Altınışık, N. Ezgi ; Krzewińska, Maja ; Dalén, Love ^LU and Götherström, Anders , et al. (2023) In Genome Biology 24.
- Contribution to journal › Article

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