Conputational Genomics Group

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2024
Mark Single-cell multiomics analysis of chronic myeloid leukemia links cellular heterogeneity to therapy response
Warfvinge, Rebecca ^LU ; Geironson Ulfsson, Linda ^LU ; Dhapola, Parashar ^LU ; Safi, Fatemeh ^LU ; Sommarin, Mikael ^LU ; Soneji, Shamit ^LU ; Hjorth-Hansen, Henrik ; Mustjoki, Satu ; Richter, Johan ^LU and Thakur, Ram Krishna ^LU , et al. (2024) In eLife 12.
- Contribution to journal › Article
2019
Mark Hif-1α Deletion May Lead to Adverse Treatment Effect in a Mouse Model of MLL-AF9-Driven AML
Velasco-Hernandez, Talia ^LU ; Soneji, Shamit ^LU ; Hidalgo, Isabel ^LU ; Erlandsson, Eva ^LU ; Cammenga, Jörg ^LU and Bryder, David ^LU (2019) In Stem Cell Reports 12(1). p.112-121
- Contribution to journal › Article
2017
Mark Single-cell molecular analysis defines therapy response and immunophenotype of stem cell subpopulations in CML
Warfvinge, Rebecca ^LU ; Geironson Ulfsson, Linda ^LU ; Sommarin, Mikael N E ^LU ; Lang, Stefan ^LU ; Karlsson, Christine ^LU ; Roschupkina, Teona ^LU ; Stenke, Leif ; Stentoft, Jesper ; Olsson-Strömberg, Ulla and Hjorth-Hansen, Henrik , et al. (2017) In Blood 129(17). p.2384-2394
- Contribution to journal › Article
Mark Hepatic Leukemia Factor Maintains Quiescence of Hematopoietic Stem Cells and Protects the Stem Cell Pool during Regeneration
Komorowska, Karolina ^LU ; Doyle, Alexander ^LU ; Wahlestedt, Martin ^LU ; Subramaniam, Agatheeswaran ^LU ; Debnath, Shubhranshu ^LU ; Chen, Jun ^LU ; Soneji, Shamit ^LU ; Van Handel, Ben ; Mikkola, Hanna K.A. and Miharada, Kenichi ^LU , et al. (2017) In Cell Reports 21(12). p.3514-3523
- Contribution to journal › Article
Mark Single-Cell Analysis Identifies Distinct Stages of Human Endothelial-to-Hematopoietic Transition
Guibentif, Carolina ^LU ; Rönn, Roger Emanuel ^LU ; Böiers, Charlotta ^LU ; Lang, Stefan ^LU ; Saxena, Shobhit ^LU ; Soneji, Shamit ^LU ; Enver, Tariq ^LU ; Karlsson, Göran ^LU and Woods, Niels-Bjarne ^LU (2017) In Cell Reports 19(1). p.10-19
- Contribution to journal › Article
2016
Mark Defining the Minimal Factors Required for Erythropoiesis through Direct Lineage Conversion
Capellera-Garcia, Sandra ^LU ; Pulecio, Julian ; Dhulipala, Kishori ; Siva, Kavitha ^LU ; Rayon-Estrada, Violeta ; Singbrant, Sofie ^LU ; Sommarin, Mikael N E ^LU ; Walkley, Carl R ; Soneji, Shamit ^LU and Karlsson, Göran ^LU , et al. (2016) In Cell Reports 15(11). p.2550-2562
- Contribution to journal › Article
Mark Cellular Barcoding Links B-1a B Cell Potential to a Fetal Hematopoietic Stem Cell State at the Single-Cell Level
Kristiansen, Trine A. ^LU ; Jaensson Gyllenbäck, Elin ^LU ; Zriwil, Alya ^LU ; Björklund, Tomas ^LU ; Daniel, Jeremy A. ; Sitnicka, Ewa ^LU ; Soneji, Shamit ^LU ; Bryder, David ^LU and Yuan, Joan ^LU (2016) In Immunity 45(2). p.346-357
- Contribution to journal › Article
Mark Identification of stage-specific surface markers in early B cell development provides novel tools for identification of progenitor populations
Jensen, Christina T. ^LU ; Lang, Stefan ^LU ; Somasundaram, Rajesh ; Soneji, Shamit ^LU and Sigvardsson, Mikael ^LU (2016) In Journal of Immunology 197(5). p.1937-1944
- Contribution to journal › Article
Mark Mitotic History Reveals Distinct Stem Cell Populations and Their Contributions to Hematopoiesis
Säwén, Petter ^LU ; Lang, Stefan ^LU ; Mandal, Pankaj ; Rossi, Derrick J ; Soneji, Shamit ^LU and Bryder, David ^LU (2016) In Cell Reports 14(12). p.2809-2818
- Contribution to journal › Article
2015
Mark SCExV: a webtool for the analysis and visualisation of single cell qRT-PCR data.
Lang, Stefan ^LU ; Ugale, Amol ^LU ; Erlandsson, Eva ^LU ; Karlsson, Göran ^LU ; Bryder, David ^LU and Soneji, Shamit ^LU (2015) In BMC Bioinformatics 16.
- Contribution to journal › Article

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