Breast cancer Proteogenomics

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2025
Mark Analysis of cfDNA fragmentomics metrics and commercial targeted sequencing panels
Helzer, Kyle T. ; Sharifi, Marina N. ; Sperger, Jamie M. ; Chrostek, Matthew R. ; Bootsma, Matthew L. ; Reese, Shannon R. ; Taylor, Amy ; Kaufmann, Katie R. ; Krause, Hannah and Schehr, Jennifer , et al. (2025) In Nature Communications 16(1).
- Contribution to journal › Article
Mark Human proteome distribution atlas for tissue-specific plasma proteome dynamics
Malmström, Erik ^LU ; Malmström, Lars ^LU ; Hauri, Simon ^LU ; Mohanty, Tirthankar ^LU ; Scott, Aaron ^LU ; Karlsson, Christofer ^LU ; Gueto-Tettay, Carlos ^LU ; Åhrman, Emma ^LU ; Nozohoor, Shahab ^LU and Tingstedt, Bobby ^LU , et al. (2025) In Cell 188(10). p.16-2822
- Contribution to journal › Article
Mark Glucose-6-phosphate-dehydrogenase on old peroxisomes maintains self-renewal of epithelial stem cells after asymmetric cell division
Bui, Hien ; Andersson, Simon ; Sola-Carvajal, Agustin ; De Marchi, Tommaso ^LU ; Vähäkangas, Eliisa ; Holopainen, Minna ; House, Andrew H. ; Rovenko, Bohdana M. ; Englund, Johanna I. and Kasper, Maria , et al. (2025) In Nature Communications 16(1).
- Contribution to journal › Article
Mark Validation of a Digital Pathology–Based Multimodal Artificial Intelligence Biomarker in a Prospective, Real-World Prostate Cancer Cohort Treated with Prostatectomy
Bjartell, Anders ^LU ; Krzyzanowska, Agnieszka ^LU ; Liu, Vinnie Y.T. ; Tierney, Meghan ; Royce, Trevor J. ; Sjöström, Martin ^LU ; Palominos-Rivera, Marisol Macarena ^LU ; Chen, Emmalyn ; Kraft, Alexandra and Esteva, Andre , et al. (2025) In Clinical Cancer Research 31(8). p.1546-1553
- Contribution to journal › Article
Mark High-Purity CTC RNA Sequencing Identifies Prostate Cancer Lineage Phenotypes Prognostic for Clinical Outcomes
Sharifi, Marina N. ; Sperger, Jamie M. ; Taylor, Amy K. ; Tippins, Katharine E. ; Reese, Shannon R. ; Carreno, Viridiana ; Kaufmann, Katherine R. ; Chang, Alex H. ; Nunamaker, Luke A. and Linebarger, Charlotte , et al. (2025) In Cancer Discovery 15(5). p.969-987
- Contribution to journal › Article
Mark Racial variation in the advanced prostate cancer genome
Feng, Emily M. ; Vo-Phamhi, Jenny ; Subramanian, Aishwarya N. ; Dias, Mikhail ; Foye, Adam ; Vinson, Jake ; Hong, Julian C. ; Freedland, Stephen J. ; Alumkal, Joshi J. and Beltran, Himisha , et al. (2025) In Prostate Cancer and Prostatic Diseases 28(4). p.902-907
- Contribution to journal › Article
2024
Mark PVT1 interacts with polycomb repressive complex 2 to suppress genomic regions with pro-apoptotic and tumour suppressor functions in multiple myeloma
Nylund, Patrick ; Garrido-Zabala, Berta ; Párraga, Alba Atienza ; Vasquez, Louella ^LU ; Pyl, Paul Theodor ^LU ; Harinck, George Mickhael ; Ma, Anqi ; Jin, Jian ; Öberg, Fredrik and Kalushkova, Antonia , et al. (2024) In Haematologica 109(2). p.567-577
- Contribution to journal › Article
Mark The analytical and clinical validity of AI algorithms to score TILs in TNBC : can we use different machine learning models interchangeably?
Vidal, Joan Martínez ; Tsiknakis, Nikos ; Staaf, Johan ^LU ; Bosch, Ana ^LU ; Ehinger, Anna ^LU ; Nimeus, Emma ^LU ; Salgado, Roberto ; Bai, Yalai ; Rimm, David L. and Hartman, Johan , et al. (2024) In EClinicalMedicine 78.
- Contribution to journal › Article
Mark Proteomic profiling reveals that ESR1 mutations enhance cyclin-dependent kinase signaling
De Marchi, Tommaso ^LU ; Lai, Chun-Fui ; Simmons, Georgia M ; Goldsbrough, Isabella ; Harrod, Alison ; Lam, Thai ; Buluwela, Lakjaya ; Kjellström, Sven ^LU ; Brueffer, Christian ^LU and Saal, Lao H ^LU , et al. (2024) In Scientific Reports 14. p.1-16
- Contribution to journal › Article
Mark Clinical cell-surface targets in metastatic and primary solid cancers
Sharifi, Marina N. ; Shi, Yue ; Chrostek, Matthew R. ; Carson Callahan, S. ; Shang, Tianfu ; Berg, Tracy J. ^LU ; Helzer, Kyle T. ; Bootsma, Matthew L. ; Sjöström, Martin ^LU and Josefsson, Andreas , et al. (2024) In JCI Insight 9(18).
- Contribution to journal › Article

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