Breast cancer Proteogenomics

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2025
Mark Evaluation of alternative prognostic thresholds for SP142 and 22C3 immunohistochemical PD-L1 expression in triple-negative breast cancer : results from a population-based cohort
Sigurjonsdottir, Gudbjörg ^LU ; De Marchi, Tommaso ^LU ; Ehinger, Anna ^LU ; Hartman, Johan ; Ullén, Susann ^LU ; Leandersson, Karin ^LU ; Bosch, Ana ^LU ; Staaf, Johan ^LU ; Killander, Fredrika ^LU and Niméus, Emma ^LU (2025) In Breast Cancer Research and Treatment 210(2). p.271-284
- Contribution to journal › Article
Mark The Progression of Mycosis Fungoides During Treatment with Mogamulizumab: A BIO-MUSE Case Study of the Tumor and Immune Response in Peripheral Blood and Tissue
Johansson, Angelica ^LU ; Kalliara, Eirini ^LU ; Belfrage, Emma ^LU ; Alling, Teodor ^LU ; Pyl, Paul Theodor ^LU ; Sandström Gerdtsson, Anna ^LU ; Gullberg, Urban ^LU ; Porwit, Anna ^LU ; Drott, Kristina ^LU and Ek, Sara ^LU (2025) In Biomedicines 13. p.1-29
- Contribution to journal › Article
Mark High-Purity CTC RNA Sequencing Identifies Prostate Cancer Lineage Phenotypes Prognostic for Clinical Outcomes
Sharifi, Marina N. ; Sperger, Jamie M. ; Taylor, Amy K. ; Tippins, Katharine E. ; Reese, Shannon R. ; Carreno, Viridiana ; Kaufmann, Katherine R. ; Chang, Alex H. ; Nunamaker, Luke A. and Linebarger, Charlotte , et al. (2025) In Cancer Discovery 15(5). p.969-987
- Contribution to journal › Article
Mark Validation of a Digital Pathology–Based Multimodal Artificial Intelligence Biomarker in a Prospective, Real-World Prostate Cancer Cohort Treated with Prostatectomy
Bjartell, Anders ^LU ; Krzyzanowska, Agnieszka ^LU ; Liu, Vinnie Y.T. ; Tierney, Meghan ; Royce, Trevor J. ; Sjöström, Martin ^LU ; Palominos-Rivera, Marisol Macarena ^LU ; Chen, Emmalyn ; Kraft, Alexandra and Esteva, Andre , et al. (2025) In Clinical Cancer Research 31(8). p.1546-1553
- Contribution to journal › Article
Mark Endothelial Cell pY397-FAK Expression Predicts the Risk of Breast Cancer Recurrences after Radiotherapy in the SweBCG91-RT Cohort
Drake, Rebecca J.G. ; Landén, Amalia H. ; Holmberg, Erik ; Tullberg, Axel Stenmark ; Killander, Fredrika ^LU ; Niméus, Emma ^LU ; Jordan, Alexander ; McGuinness, Jennifer ; Karlsson, Per and Hodivala-Dilke, Kairbaan (2025) In Clinical Cancer Research 31(7). p.1323-1332
- Contribution to journal › Article
Mark Combinatorial DNMTs and EZH2 inhibition reprograms the H3K27me3 and DNAme-mediated onco-epigenome to suppress multiple myeloma proliferation
Atienza Párraga, Alba ; Nylund, Patrick ; Diamanti, Klev ; Garrido-Zabala, Berta ; Tziola, Stefania Iliana ; Vasquez, Louella ^LU ; Pyl, Paul Theodor ^LU ; Raykova, Doroteya ; Skaftason, Aron and Ma, Anqi , et al. (2025) In Scientific Reports 15(1).
- Contribution to journal › Article
2024
Mark PVT1 interacts with polycomb repressive complex 2 to suppress genomic regions with pro-apoptotic and tumour suppressor functions in multiple myeloma
Nylund, Patrick ; Garrido-Zabala, Berta ; Párraga, Alba Atienza ; Vasquez, Louella ^LU ; Pyl, Paul Theodor ^LU ; Harinck, George Mickhael ; Ma, Anqi ; Jin, Jian ; Öberg, Fredrik and Kalushkova, Antonia , et al. (2024) In Haematologica 109(2). p.567-577
- Contribution to journal › Article
Mark The analytical and clinical validity of AI algorithms to score TILs in TNBC : can we use different machine learning models interchangeably?
Vidal, Joan Martínez ; Tsiknakis, Nikos ; Staaf, Johan ^LU ; Bosch, Ana ^LU ; Ehinger, Anna ^LU ; Nimeus, Emma ^LU ; Salgado, Roberto ; Bai, Yalai ; Rimm, David L. and Hartman, Johan , et al. (2024) In EClinicalMedicine 78.
- Contribution to journal › Article
Mark Clinical cell-surface targets in metastatic and primary solid cancers
Sharifi, Marina N. ; Shi, Yue ; Chrostek, Matthew R. ; Carson Callahan, S. ; Shang, Tianfu ; Berg, Tracy J. ^LU ; Helzer, Kyle T. ; Bootsma, Matthew L. ; Sjöström, Martin ^LU and Josefsson, Andreas , et al. (2024) In JCI Insight 9(18).
- Contribution to journal › Article
Mark Proteomic profiling reveals that ESR1 mutations enhance cyclin-dependent kinase signaling
De Marchi, Tommaso ^LU ; Lai, Chun-Fui ; Simmons, Georgia M ; Goldsbrough, Isabella ; Harrod, Alison ; Lam, Thai ; Buluwela, Lakjaya ; Kjellström, Sven ^LU ; Brueffer, Christian ^LU and Saal, Lao H ^LU , et al. (2024) In Scientific Reports 14. p.1-16
- Contribution to journal › Article

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