Research Group Lung Cancer

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2020
Mark High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations
Zhang, Yiqun ; Chen, Fengju ; Fonseca, Nuno A ; He, Yao ; Fujita, Masashi ; Nakagawa, Hidewaki ; Zhang, Zemin ; Brazma, Alvis and Creighton, Chad J (2020) In Nature Communications 11.
- Contribution to journal › Article
Mark Reconstructing evolutionary trajectories of mutation signature activities in cancer using TrackSig
Rubanova, Yulia ; Shi, Ruian ; Harrigan, Caitlin F ; Li, Roujia ; Wintersinger, Jeff ; Sahin, Nil ; Deshwar, Amit G and Morris, Quaid D (2020) In Nature Communications 11.
- Contribution to journal › Article
Mark Inferring structural variant cancer cell fraction
Cmero, Marek ; Yuan, Ke ; Ong, Cheng Soon ; Schröder, Jan ; Corcoran, Niall M ; Papenfuss, Tony ; Hovens, Christopher M ; Markowetz, Florian and Macintyre, Geoff (2020) In Nature Communications 11.
- Contribution to journal › Article
Mark Integrative pathway enrichment analysis of multivariate omics data
Paczkowska, Marta ; Barenboim, Jonathan ; Sintupisut, Nardnisa ; Fox, Natalie S ; Zhu, Helen ; Abd-Rabbo, Diala ; Mee, Miles W ; Boutros, Paul C and Reimand, Jüri (2020) In Nature Communications 11.
- Contribution to journal › Article
Mark A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns
Jiao, Wei ; Atwal, Gurnit ; Polak, Paz ; Karlic, Rosa ; Cuppen, Edwin ; Danyi, Alexandra ; de Ridder, Jeroen ; van Herpen, Carla ; Lolkema, Martijn P and Steeghs, Neeltje , et al. (2020) In Nature Communications 11.
- Contribution to journal › Article
Mark Pathway and network analysis of more than 2500 whole cancer genomes
Reyna, Matthew A ; Haan, David ; Paczkowska, Marta ; Verbeke, Lieven P C ; Vazquez, Miguel ; Kahraman, Abdullah ; Pulido-Tamayo, Sergio ; Barenboim, Jonathan ; Wadi, Lina and Dhingra, Priyanka , et al. (2020) In Nature Communications 11.
- Contribution to journal › Article
Mark Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis
Carlevaro-Fita, Joana ; Lanzós, Andrés ; Feuerbach, Lars ; Hong, Chen ; Mas-Ponte, David ; Pedersen, Jakob Skou ; Johnson, Rory ; Abascal, Federico and von Mering, Christian (2020) In Communications Biology 3.
- Contribution to journal › Article
Mark Comprehensive molecular characterization of mitochondrial genomes in human cancers
Yuan, Yuan ; Ju, Young Seok ; Kim, Youngwook ; Li, Jun ; Wang, Yumeng ; Yoon, Christopher J ; Yang, Yang ; Martincorena, Inigo ; Creighton, Chad J and Weinstein, John N , et al. (2020) In Nature Genetics 52(3). p.342-352
- Contribution to journal › Article
Mark Butler enables rapid cloud-based analysis of thousands of human genomes
Yakneen, Sergei ; Waszak, Sebastian M ; Gertz, Michael and Korbel, Jan O (2020) In Nature Biotechnology 38(3). p.288-292
- Contribution to journal › Article
Mark Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition
Rodriguez-Martin, Bernardo ; Alvarez, Eva G ; Baez-Ortega, Adrian ; Zamora, Jorge ; Supek, Fran ; Demeulemeester, Jonas ; Santamarina, Martin ; Ju, Young Seok ; Temes, Javier and Garcia-Souto, Daniel , et al. (2020) In Nature Genetics 52(3). p.306-319
- Contribution to journal › Article

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