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- 2024
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Mark
AlphaML : A clear, legible, explainable, transparent, and elucidative binary classification platform for tabular data
(
- Contribution to journal › Article
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Mark
The fifth international hackathon for developing computational cloud-based tools and resources for pan-structural variation and genomics
(
- Contribution to journal › Article
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Mark
T-cell commitment inheritance—an agent-based multi-scale model
(
- Contribution to journal › Article
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Mark
Decoding Genetic Enigmas in Sarcoma
2024) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
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Mark
Temporal cluster-based local deep learning or signal processing-temporal convolutional transformer for daily runoff prediction?
(
- Contribution to journal › Article
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Mark
What is a blink? : Classifying and characterizing blinks in eye openness signals
2024) In Behavior Research Methods(
- Contribution to journal › Article
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Mark
WOMBAT-P : Benchmarking Label-Free Proteomics Data Analysis Workflows
(
- Contribution to journal › Article
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Mark
Exploring different methodological approaches to unlock paleobiodiversity in peat profiles using ancient DNA
(
- Contribution to journal › Article
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Mark
Machine Learning Models for Prediction of Diabetic Microvascular Complications
2024) In Journal of diabetes science and technology(
- Contribution to journal › Article
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Mark
A machine learning framework for spatio-temporal vulnerability mapping of groundwaters to nitrate in a data scarce region in Lenjanat Plain, Iran
(
- Contribution to journal › Article
- 2023
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Mark
805P Tumor-informed ctDNA detection as a predictive marker for postoperative residual disease in epithelial ovarian cancer: A feasibility study
(
- Contribution to journal › Published meeting abstract
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IGHV allele similarity clustering improves genotype inference from adaptive immune receptor repertoire sequencing data
(
- Contribution to journal › Article
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Mark
The Bcm rule allows a spinal cord model to learn rhythmic movements
(
- Contribution to journal › Article
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Mark
Fetal programming and parent-of-origin effects of type 2 diabetes and insulin secretion
2023) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
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Mark
EasyNER: A Customizable Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical Text
2023)(
- Working paper/Preprint › Preprint in preprint archive
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Mark
How to improve data quality in dog eye tracking
(
- Contribution to journal › Article
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Mark
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics
(
- Contribution to journal › Article
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Mark
ECG Modeling for Simulation of Arrhythmias in Time-Varying Conditions
(
- Contribution to journal › Article
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Applying Unique Molecular Indices with an Extensive All-in-One Forensic SNP Panel for Improved Genotype Accuracy and Sensitivity
(
- Contribution to journal › Article
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Mark
Dynamic Community Detection for Brain Functional Networks During Music Listening With Block Component Analysis
(
- Contribution to journal › Article
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Mark
Taphonomic experiments reveal authentic molecular signals for fossil melanins and verify preservation of phaeomelanin in fossils
(
- Contribution to journal › Article
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Mark
aMeta : an accurate and memory-efficient ancient metagenomic profiling workflow
(
- Contribution to journal › Article
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Mark
Preoperative ctDNA Levels Are Associated With Poor Overall Survival in Patients With Ovarian Cancer
(
- Contribution to journal › Article
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Mark
Brain fingerprinting using EEG graph inference
2023) 31st European Signal Processing Conference, EUSIPCO 2023 In European Signal Processing Conference p.1025-1029(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
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Mark
FAM : Relative Flatness Aware Minimization
2023) 2nd Annual Workshop on Topology, Algebra, and Geometry in Machine Learning, TAG-ML 2023, held at the International Conference on Machine Learning, ICML 2023 In Proceedings of Machine Learning Research 221. p.37-49(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
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Mark
Emergent spatial goals in an integrative model of the insect central complex
(
- Contribution to journal › Article
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Mark
Pollination supply models from a local to global scale
(
- Contribution to journal › Article
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Mark
CGG toolkit : Software components for computational genomics
(
- Contribution to journal › Article
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Mark
Parallel matters : Efficient polyp segmentation with parallel structured feature augmentation modules
(
- Contribution to journal › Article
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Mark
GlassesValidator : A data quality tool for eye tracking glasses
2023) In Behavior Research Methods(
- Contribution to journal › Article
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Mark
Deep learning prediction models based on EHR trajectories : A systematic review
(
- Contribution to journal › Scientific review
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Evaluate Transformer model and Self-Attention mechanism in the Yangtze River basin runoff prediction
(
- Contribution to journal › Article
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Mark
Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis
(
- Contribution to journal › Article
- 2022
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Mark
Cold-induced anesthesia impairs path integration memory in dung beetles
(
- Contribution to journal › Article
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Mark
CELLoGeNe - An energy landscape framework for logical networks controlling cell decisions
(
- Contribution to journal › Article
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Mark
Enhanced survival prediction using explainable artificial intelligence in heart transplantation
(
- Contribution to journal › Article
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Mark
Computational Single-Cell Genomics Methods for Cell State Estimation and their Application to Hematopoietic Systems
2022) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
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Mark
Neural network training with highly incomplete medical datasets
(
- Contribution to journal › Article
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Mark
Network analysis of sea turtle movements and connectivity: A tool for conservation prioritization
(
- Contribution to journal › Article
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Mark
Non-monotone cellular automata : Order prevails over chaos
(
- Contribution to journal › Article
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Mark
Temporal population structure, a genetic dating method for ancient Eurasian genomes from the past 10,000 years
(
- Contribution to journal › Article
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Mark
Adaptive Inhibition for Optimal Energy Consumption by Animals, Robots and Neurocomputers
2022) 16th International Conference on Simulation of Adaptive Behavior In Lecture Notes in Computer Science 13499. p.103-114(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
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Mark
Bayesian modeling of item heterogeneity in dichotomous recognition memory data and prospects for computerized adaptive testing
(
- Contribution to journal › Article
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Mark
Clinical associations of ESR2 (estrogen receptor beta) expression across thousands of primary breast tumors
(
- Contribution to journal › Article
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Mark
Nonlinear vocal phenomena affect human perceptions of distress, size and dominance in puppy whines
(
- Contribution to journal › Article
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Mark
Assessing the Effect of Incretin Hormones and Other Insulin Secretagogues on Pancreatic Beta-Cell Function : Review on Mathematical Modelling Approaches
(
- Contribution to journal › Scientific review
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Mark
Model visualization : from micro to macro
2022) p.207-221(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Extracting structural motifs from pair distribution function data of nanostructures using explainable machine learning
(
- Contribution to journal › Article
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Mark
Computational models predicting the early development of the COVID-19 pandemic in Sweden : systematic review, data synthesis, and secondary validation of accuracy
(
- Contribution to journal › Article
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Mark
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
(
- Contribution to journal › Article
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Mark
Dimensionality Reduction : Overview, Technical Details, and Some Applications
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Modelling intra-muscular contraction dynamics using in silico to in vivo domain translation
(
- Contribution to journal › Article
- 2021
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Mark
Data integration and visualization in type 2 diabetes research and care: From biological mechanisms to precision medicine.
2021) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
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Mark
Modelling Biomolecular Interactions of Protein Solutions : Combining Theories and Experiments
2021)(
- Thesis › Doctoral thesis (compilation)
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Mark
Detection of structural variations in densely-labelled optical DNA barcodes : A hidden Markov model approach
(
- Contribution to journal › Article
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Mark
A new pipeline for the normalization and pooling of metabolomics data
(
- Contribution to journal › Article
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Mark
Population genetic considerations for using biobanks as international resources in the pandemic era and beyond
(
- Contribution to journal › Scientific review
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Mark
Preexisting Somatic Mutations of Estrogen Receptor Alpha (ESR1) in Early-Stage Primary Breast Cancer
(
- Contribution to journal › Article
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Mark
RNA Sequencing for Molecular Diagnostics in Breast Cancer
2021) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
-
Mark
Quality issues in georeferencing : From physical collections to digital data repositories for ecological research
(
- Contribution to journal › Letter
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Mark
The future of dna barcoding : Reflections from early career researchers
(
- Contribution to journal › Article
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Mark
multiclassPairs: An R package to train multiclass pair-based classifier
(
- Contribution to journal › Debate/Note/Editorial
- 2020
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Mark
Utilizing Deep Learning and RDF to Predict Heart Transplantation Survival
2020) 11th International Symposium on Foundations of Information and Knowledge Systems, FoIKS 2020 In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 12012 LNCS. p.175-190(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
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Mark
Automatic discovery of resource-restricted Convolutional Neural Network topologies for myoelectric pattern recognition
(
- Contribution to journal › Article
-
Mark
Bio-inspired crossover and a model of neuronal reprogramming
2020)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Natural sources and experimental generation of bioaerosols : Challenges and perspectives
(
- Contribution to journal › Scientific review
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Mark
precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions
2020)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
Modeling and quality assessment of nystagmus eye movements recorded using an eye-tracker
(
- Contribution to journal › Article
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Mark
Biological Data Questions the Support of the Self Inhibition Required for Pattern Generation in the Half Center Model
(
- Contribution to journal › Article
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Mark
Genomic and Transcriptomic Analyses of Osteogenic Tumours of Bone
2020) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
-
Mark
The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome
(
- Contribution to journal › Article
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Mark
Features of increased malignancy in eosinophilic clear cell renal cell carcinoma
(
- Contribution to journal › Article
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Mark
It's about time : Analysing simplifying assumptions for modelling multi-step pathways in systems biology
(
- Contribution to journal › Article
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Mark
Interpretation of variation in omics data : Applications in proteomics for sustainable agriculture
2020)(
- Thesis › Doctoral thesis (compilation)
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Mark
A crowdsourced set of curated structural variants for the human genome
(
- Contribution to journal › Article
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Mark
Strategy for Disease Diagnosis, Progression Prediction, Risk Group Stratification and Treatment—Case of COVID-19
(
- Contribution to journal › Article
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Mark
Butler enables rapid cloud-based analysis of thousands of human genomes
(
- Contribution to journal › Article
- 2019
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Mark
Class discriminator-based EMG classification approach for detection of neuromuscular diseases using discriminator-dependent decision rule (D3R) approach
2019) 1st International Symposium on Signal and Image Processing, ISSIP 2017 In Advances in Intelligent Systems and Computing 727. p.49-56(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
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Mark
Computational proteomics with Jupyter and Python
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
The Epigenetic Impact of Transposable Elements in Human Brain Development
(
- Thesis › Doctoral thesis (compilation)
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Mark
Inferring community assembly processes from macroscopic patterns using dynamic eco-evolutionary models and Approximate Bayesian Computation (ABC)
(
- Contribution to journal › Scientific review
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Mark
Batch adjustment by reference alignment (BARA) : Improved prediction performance in biological test sets with batch effects
(
- Contribution to journal › Article
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Mark
How good are pathogenicity predictors in detecting benign variants?
(
- Contribution to journal › Article
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Mark
Classification of anomaly-free 2HDMs with a gauged U (1)′ symmetry
(
- Contribution to journal › Article
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Mark
Establishing strong imputation performance of a denoising autoencoder in a wide range of missing data problems
(
- Contribution to journal › Article
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Mark
PTPD : Predicting therapeutic peptides by deep learning and word2vec
(
- Contribution to journal › Article
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Mark
Phenotype prediction accuracy – A Swedish perspective
(
- Contribution to journal › Article
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Mark
Statistical inference with deep latent variable models
2019)(
- Thesis › Doctoral thesis (compilation)
-
Mark
A model of how depth facilitates scene-relative object motion perception
(
- Contribution to journal › Article
-
Mark
Tailored reduced kinetic mechanisms for atmospheric chemistry modeling
(
- Contribution to journal › Article
-
Mark
SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome
2019)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
Bioinformatics resources for microbial research in biological systems
2019) p.45-60(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Biological interpretations of the biphasic model of ontogenetic brain-body allometry : A reply to Packard
(
- Contribution to journal › Article
- 2018
-
Mark
Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative
(
- Contribution to journal › Article
-
Mark
Representativeness of variation benchmark datasets
(
- Contribution to journal › Article
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Mark
Haematopoietic stem cells : Entropic landscapes of differentiation
(
- Contribution to journal › Article
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Mark
Integrated Brain Atlas for Unbiased Mapping of Nervous System Effects Following Liraglutide Treatment
(
- Contribution to journal › Article
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Mark
Biased Inference of Selection Due to GC-Biased Gene Conversion and the Rate of Protein Evolution in Flycatchers When Accounting for It
(
- Contribution to journal › Article
-
Mark
Sex-biased gene expression, sexual antagonism and levels of genetic diversity in the collared flycatcher (Ficedula albicollis) genome
(
- Contribution to journal › Article
- 2017
-
Mark
Applications of Machine Learning on Natural Language Processing and Biomedical Data
2017)(
- Thesis › Licentiate thesis