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- 2024
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Mark
WOMBAT-P : Benchmarking Label-Free Proteomics Data Analysis Workflows
(
- Contribution to journal › Article
-
Mark
The quantification of zebrafish ocular-associated proteins provides hints for sex-biased visual impairments and perception
(
- Contribution to journal › Article
-
Mark
LRPPRC and SLIRP synergize to maintain sufficient and orderly mammalian mitochondrial translation
2024) In Nucleic Acids Research(
- Contribution to journal › Article
- 2023
-
Mark
A proteomics dataset capturing myeloid cell responses upon cellular exposure to fungicides, adjuvants and fungicide formulations
(
- Contribution to journal › Article
-
Mark
PLK1 as a cooperating partner for BCL2-mediated antiapoptotic program in leukemia
(
- Contribution to journal › Article
-
Mark
Quantification of proteomic profile changes in the hemolymph of crayfish during in vitro coagulation
(
- Contribution to journal › Article
-
Mark
Comparative gut proteomics study revealing adaptive physiology of Eurasian spruce bark beetle, Ips typographus (Coleoptera: Scolytinae)
(
- Contribution to journal › Article
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Mark
An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants
(
- Contribution to journal › Article
- 2022
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Mark
Choice of High-Throughput Proteomics Method Affects Data Integration with Transcriptomics and the Potential Use in Biomarker Discovery
(
- Contribution to journal › Article
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Mark
Adjuvants in fungicide formulations can be skin sensitizers and cause different types of cell stress responses
(
- Contribution to journal › Article
-
Mark
Plasma proteome profiling of healthy individuals across the life span in a Sicilian cohort with long-lived individuals
(
- Contribution to journal › Article
- 2021
-
Mark
OmicLoupe : facilitating biological discovery by interactive exploration of multiple omic datasets and statistical comparisons
(
- Contribution to journal › Article
-
Mark
High-Resolution Proteomic Profiling Shows Sexual Dimorphism in Zebrafish Heart-Associated Proteins
(
- Contribution to journal › Article
-
Mark
Article leaf apoplast of field-grown potato analyzed by quantitative proteomics and activity-based protein profiling
(
- Contribution to journal › Article
-
Mark
Stable bull fertility protein markers in seminal plasma
(
- Contribution to journal › Article
- 2020
-
Mark
Interactive proteogenomic exploration of response to Fusarium head blight in oat varieties with different resistance
(
- Contribution to journal › Article
-
Mark
An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations
(
- Contribution to journal › Article
-
Mark
Proteomic changes after fertilization and before first cleavage in rainbow trout Oncorhynchus mykiss
(
- Contribution to journal › Article
- 2019
-
Mark
NormalyzerDE : Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis
(
- Contribution to journal › Article
-
Mark
Towards a standardized bioinformatics infrastructure for N- and O-glycomics
(
- Contribution to journal › Scientific review
-
Mark
Proteomics of PTI and Two ETI Immune Reactions in Potato Leaves
(
- Contribution to journal › Article
- 2018
-
Mark
Comparative membrane-associated proteomics of three different immune reactions in potato
(
- Contribution to journal › Article
-
Mark
In vitro evolution of antibodies inspired by in vivo evolution
(
- Contribution to journal › Article
-
Mark
Patient-derived xenograft models reveal intratumor heterogeneity and temporal stability in neuroblastoma
(
- Contribution to journal › Article
- 2017
-
Mark
Antibody-encoding repertoires of bone marrow and peripheral blood-a focus on IgE
(
- Contribution to journal › Letter
-
Mark
Proteomic analysis of phytophthora infestans reveals the importance of cell wall proteins in pathogenicity
(
- Contribution to journal › Article
-
Mark
Antibody heavy chain variable domains of different germline gene origins diversify through different paths
(
- Contribution to journal › Article
-
Mark
NLK-mediated phosphorylation of HDAC1 negatively regulates Wnt signaling
(
- Contribution to journal › Article
-
Mark
A community proposal to integrate proteomics activities in ELIXIR
(
- Contribution to journal › Article
-
Mark
Data on haplotype-supported immunoglobulin germline gene inference
(
- Contribution to journal › Article
-
Mark
Parallel antibody germline gene and haplotype analyses support the validity of immunoglobulin germline gene inference and discovery
(
- Contribution to journal › Article
- 2016
-
Mark
Aberrant activation of the PI3K/mTOR pathway promotes resistance to sorafenib in AML
(
- Contribution to journal › Article
-
Mark
Dinosaur : A Refined Open-Source Peptide MS Feature Detector
(
- Contribution to journal › Article
-
Mark
Targeted Proteomics Approach for Precision Plant Breeding
(
- Contribution to journal › Article
- 2015
-
Mark
BEX1 acts as a tumor suppressor in acute myeloid leukemia.
(
- Contribution to journal › Article
-
Mark
DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.
(
- Contribution to journal › Article
-
Mark
Comparative proteomic analysis of hyphae and germinating cysts of Phytophthora pisi and Phytophthora sojae.
(
- Contribution to journal › Article
-
Mark
Is label-free LC-MS/MS ready for biomarker discovery?
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis
(
- Contribution to journal › Article
-
Mark
Representation of selected-reaction monitoring data in the mzQuantML data standard
(
- Contribution to journal › Article
- 2014
-
Mark
Data processing methods and quality control strategies for label-free LC-MS protein quantification.
(
- Contribution to journal › Scientific review
-
Mark
Phosphite-induced changes of the transcriptome and secretome in Solanum tuberosum leading to resistance against Phytophthora infestans
(
- Contribution to journal › Article
-
Mark
Proteomics and transcriptomics of the BABA-induced resistance response in potato using a novel functional annotation approach
(
- Contribution to journal › Article
-
Mark
Quantitative proteomics and transcriptomics of potato in response to Phytophthora infestans in compatible and incompatible interactions
(
- Contribution to journal › Article
-
Mark
Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets
(
- Contribution to journal › Article
-
Mark
Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family
(
- Contribution to journal › Article
-
Mark
Framtidens mat – om husdjursavel och växtförädling
2014)(
- Book/Report › Book
-
Mark
Plagiering och upphovsrätt ur ett studentperspektiv. Reflektioner runt arbetet mot en guide för examensarbetare och doktorander
2014)(
- Book/Report › Report
- 2013
-
Mark
The HUPO proteomics standards initiative-mass spectrometry controlled vocabulary
(
- Contribution to journal › Article
-
Mark
Automated quality control system for LC-SRM setups.
(
- Contribution to journal › Article
-
Mark
An adaptive alignment algorithm for quality-controlled label-free LC-MS.
(
- Contribution to journal › Article
-
Mark
Proteome of the nematode-trapping cells of the fungus Monacrosporium haptotylum.
(
- Contribution to journal › Article
- 2012
-
Mark
Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.
(
- Contribution to journal › Article
-
Mark
Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.
(
- Contribution to journal › Article
-
Mark
TraML: a standard format for exchange of selected reaction monitoring transition lists
(
- Contribution to journal › Article
-
Mark
Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons
(
- Contribution to journal › Article
-
Mark
Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage
(
- Contribution to journal › Article
-
Mark
Paranoid potato : phytophthora-resistant genotype shows constitutively activated defense
(
- Contribution to journal › Article
- 2011
-
Mark
Facing challenges in proteomics today and in the coming decade: report of roundtable discussions at the 4th EuPA Scientific Meeting, Portugal, Estoril 2010
(
- Contribution to journal › Letter
-
Mark
Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis
(
- Contribution to journal › Article
-
Mark
Generic workflow for quality assessment of quantitative label-free LC-MS analysis
(
- Contribution to journal › Article
-
Mark
mzML - a community standard for mass Spectrometry data
(
- Contribution to journal › Article
-
Mark
Laboratory data and sample management for proteomics.
(
- Chapter in Book/Report/Conference proceeding › Book chapter
- 2010
-
Mark
Improved label-free LC-MS analysis by wavelet-based noise rejection
(
- Contribution to journal › Article
- 2009
-
Mark
Quantification of Membrane Proteins Using Nonspecific Protease Digestions
(
- Contribution to journal › Article
-
Mark
Differential proteomic analysis of HT29 Cl.16E cells line and intestinal epithelial cells by LC ESI/QTOF mass spectrometry.
(
- Contribution to journal › Article
-
Mark
Proteome analysis of the xylose-fermenting mutant yeast strain TMB 3400.
(
- Contribution to journal › Article
-
Mark
A label-free nano-liquid chromatography-mass spectrometry approach for quantitative serum peptidomics in Crohn's disease patients.
(
- Contribution to journal › Article
-
Mark
Getting a grip on proteomics data - Proteomics Data Collection (ProDaC)
(
- Contribution to journal › Article
-
Mark
Proteomic expression analysis and comparison of protein and mRNA expression profiles in human malignant gliomas
(
- Contribution to journal › Article
-
Mark
The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data
(
- Contribution to journal › Article
-
Mark
Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands
(
- Contribution to journal › Article
- 2008
-
Mark
Wavelet-based method for noise characterization and rejection in high-performance liquid chromatography coupled to mass spectrometry
(
- Contribution to journal › Article
-
Mark
Comparative Study Of Gene Expression And Protein Expression Profiling In Gliomas
2008) 8th Congress of the European-Association-for-Neuro-Oncology (EANO) In Neuro-Oncology 10(6). p.1110-1110(
- Contribution to journal › Published meeting abstract
-
Mark
Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching
(
- Contribution to journal › Article
-
Mark
Human Proteinpedia enables sharing of human protein data.
(
- Contribution to journal › Letter
-
Mark
Proteomics Data Collection - 2nd ProDaC Workshop 5 October 2007, Seoul, Korea
(
- Contribution to journal › Article
- 2007
-
Mark
Automated reporting from gel-based proteomics experiments using the open source Proteios database application
(
- Contribution to journal › Article
-
Mark
Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning
(
- Contribution to journal › Article
-
Mark
Proteomics Data Collection - the 1st ProDaC workshop 26 April 2007 Ecole Normale Supérieur, Lyon, France.
(
- Contribution to journal › Article
- 2006
-
Mark
Chemical derivatization of phosphoserine and phosphothreonine containing peptides to increase sensitivity for MALDI-based analysis and for selectivity of MS/MS analysis
(
- Contribution to journal › Article
-
Mark
Keeping track of gel-based proteomics experiments using the open-source Proteios software
2006) 7th Siena meeting From genome to proteome(
- Contribution to conference › Abstract
- 2005
-
Mark
Automated protein identification by the combination of MALDI MS and MS/MS spectra from different instruments
(
- Contribution to journal › Article
-
Mark
Mass spectrometry for protein identification.
2005) p.429-447(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Tutorial on protein fingerprinting
2005)(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
The protein expression of Streptococcus pyogenes is significantly influenced by human plasma.
(
- Contribution to journal › Article
- 2004
-
Mark
Automated methods for improved protein identification by peptide mass fingerprinting
(
- Contribution to journal › Article
-
Mark
Acidic proteome of growing and resting Lactococcus lactis metabolizing maltose
(
- Contribution to journal › Article
-
Mark
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
(
- Contribution to journal › Article
- 2003
-
Mark
Automated batch filtering and recalibration of mass spectra for increased protein identification rates in high-throughput proteomics.
2003) Proteomic Forum(
- Contribution to conference › Abstract
- 2002
-
Mark
Enhanced Exopolysaccharide Production by Metabolic Engineering of Streptococcus thermophilus.
(
- Contribution to journal › Article
- 2001
-
Mark
Metabolic Engineering of Disaccharide Catabolism for Polysaccharide Formation in Lactococcus lactis and Streptococcus thermophilus
2001)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Starch-hydrolysing bacteria from Ethiopian soda lakes
(
- Contribution to journal › Article