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- 2024
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Mark
Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche
(
- Contribution to journal › Article
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Mark
Immune evasion by proteolytic shedding of natural killer group 2, member D ligands in Helicobacter pylori infection
(
- Contribution to journal › Article
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Mark
Multimodal Mass Spectrometry Identifies a Conserved Protective Epitope in S. pyogenes Streptolysin O
(
- Contribution to journal › Article
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Mark
The role of extracellular vesicle fusion with target cells in triggering systemic inflammation
(
- Contribution to journal › Article
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Mark
The hinge-engineered IgG1-IgG3 hybrid subclass IgGh47 potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 antibodies
(
- Contribution to journal › Article
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Mark
Population scale proteomics enables adaptive digital twin modelling in sepsis
2024)(
- Working paper/Preprint › Preprint in preprint archive
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Mark
Proteomic profiling reveals that ESR1 mutations enhance cyclin-dependent kinase signaling
(
- Contribution to journal › Article
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Mark
Quantification of adaptive immune responses against protein binding interfaces in the streptococcal M1 protein
2024) In Molecular and Cellular Proteomics(
- Contribution to journal › Article
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Mark
Protective Non-neutralizing anti-N-terminal Domain mAb Maintains Fc-mediated Function against SARS-COV-2 Variants up to BA.2.86-JN.1 with Superfluous In Vivo Protection against JN.1 Due to Attenuated Virulence
(
- Contribution to journal › Article
-
Mark
Protective non-neutralizing SARS-CoV-2 monoclonal antibodies
(
- Contribution to journal › Scientific review
-
Mark
Peptide clustering enhances large-scale analyses and reveals proteolytic signatures in mass spectrometry data
(
- Contribution to journal › Article
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Mark
Multiplex genome editing eliminates the Warburg Effect without impacting growth rate in mammalian cells
2024) In bioRxiv : the preprint server for biology(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
Biofilm-dispersed pneumococci induce elevated leukocyte and platelet activation
(
- Contribution to journal › Article
- 2023
-
Mark
A human monoclonal antibody bivalently binding two different epitopes in streptococcal M protein mediates immune function
(
- Contribution to journal › Article
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Mark
Data-driven microscopy allows for automated context-specific acquisition of high-fidelity image data
(
- Contribution to journal › Article
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Mark
Group A streptococci induce stronger M protein-fibronectin interaction when specific human antibodies are bound
(
- Contribution to journal › Article
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Mark
Subclass-switched anti-Spike IgG3 oligoclonal cocktails strongly enhance Fc-mediated opsonization
(
- Contribution to journal › Article
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Mark
Small-molecule-mediated OGG1 inhibition attenuates pulmonary inflammation and lung fibrosis in a murine lung fibrosis model
(
- Contribution to journal › Article
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Mark
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics
(
- Contribution to journal › Article
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Mark
Proteogenomics decodes the evolution of human ipsilateral breast cancer
(
- Contribution to journal › Article
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Mark
Role of serotype and virulence determinants of Streptococcus pyogenes biofilm bacteria in internalization and persistence in epithelial cells in vitro.
(
- Contribution to journal › Article
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Mark
Alveolar epithelial cells are competent producers of interstitial extracellular matrix with disease relevant plasticity in a human in vitro 3D model
(
- Contribution to journal › Article
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Mark
Phenotypic characterization of acoustically enriched extracellular vesicles from pathogen-activated platelets
(
- Contribution to journal › Article
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Mark
In Vivo Profiling of the Vascular Cell Surface Proteome in Murine Models of Bacteremia
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Quantification of Phagocytosis Using Flow Cytometry
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Measurement of Antibody Binding Affinity on Bacterial Surfaces Using Flow Cytometry
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Bacterial Pathogenesis : Methods and Protocols
- Book/Report › Anthology (editor)
-
Mark
Generalized precursor prediction boosts identification rates and accuracy in mass spectrometry based proteomics
(
- Contribution to journal › Article
-
Mark
A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis
(
- Contribution to journal › Article
-
Mark
Preface
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Reply to Pandey: IgG3 allotypes, modulation of antigen binding by constant domain changes, and therapeutic applications of Fc engineering
(
- Contribution to journal › Letter
-
Mark
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems
(
- Contribution to journal › Article
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Mark
Serum proteome profiles in patients treated with targeted temperature management after out-of-hospital cardiac arrest
(
- Contribution to journal › Article
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Mark
Analysis of Neutrophil and Monocyte Inflammation Markers in Response to Gram-Positive Anaerobic Cocci
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Quantification of heat shock proteins in the posterior interosseous nerve among subjects with type 1 and type 2 diabetes compared to healthy controls
(
- Contribution to journal › Article
-
Mark
Shigella IpaA mediates actin bundling through diffusible vinculin oligomers with activation imprint
(
- Contribution to journal › Article
-
Mark
Exploring Monoclonal Antibody Action Against the Group A Streptococcal M Protein
2023) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
-
Mark
IdeS, a secreted proteinase of Streptococcus pyogenes, is bound to a nuclease at the bacterial surface where it inactivates opsonizing IgG antibodies
(
- Contribution to journal › Article
-
Mark
Acoustic trapping based high throughput isolation and characterization of pathogen activated platelet derived extracellular vesicles from plasma
2023) 27th International conference on miniaturized systems for chemistry and life sciences, MicroTAS 2023(
- Contribution to conference › Abstract
-
Mark
Characterization of acoustically isolated extracellular vesicles from pathogen activated platelets
2023) Nordic Proteomics Society meeting 2023(
- Contribution to conference › Abstract
-
Mark
Pathogen-driven degradation of endogenous and therapeutic antibodies during streptococcal infections
(
- Contribution to journal › Article
-
Mark
Protective non-neutralizing mAbs Ab94 and Ab81 retain high-affinity and potent Fc-mediated function against SARS-CoV-2 variants from Omicron to XBB1.5
2023)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis
(
- Contribution to journal › Article
- 2022
-
Mark
Distinct Serotypes of Streptococcal M Proteins Mediate Fibrinogen-Dependent Platelet Activation and Proinflammatory Effects
(
- Contribution to journal › Article
-
Mark
Nanoscale binding site localization by molecular distance estimation on native cell surfaces using topological image averaging
(
- Contribution to journal › Article
-
Mark
Rapid release of sepsis markers heparin-binding protein and calprotectin triggered by anaerobic cocci poses an underestimated threat
(
- Contribution to journal › Article
-
Mark
Short-term exposure to urban PM2.5 particles induces histopathological and inflammatory changes in the rat small intestine
(
- Contribution to journal › Article
-
Mark
Interaction of Bartonella henselae with Fibronectin Represents the Molecular Basis for Adhesion to Host Cells
(
- Contribution to journal › Article
-
Mark
Data-driven microscopy allows for automated targeted acquisition of relevant data with higher fidelity
2022)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
Invasive Streptococcal Infection Can Lead to the Generation of Cross-Strain Opsonic Antibodies
(
- Contribution to journal › Article
-
Mark
Lessons from the pandemic : Responding to emerging zoonotic viral diseases-a Keystone Symposia report
(
- Contribution to journal › Article
-
Mark
Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia
(
- Contribution to journal › Article
-
Mark
Host Defense Peptides LL-37 and Lactoferrin Trigger ET Release from Blood-Derived Circulating Monocytes
(
- Contribution to journal › Article
-
Mark
SEPARATION OF SINGLETS AND CLUSTERS OF GROUP A STREPTOCOCCI USING DETERMINISTIC LATERAL DISPLACEMENT AND FILTER SONICATION
2022) 26th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2022 In MicroTAS 2022 - 26th International Conference on Miniaturized Systems for Chemistry and Life Sciences p.306-307(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
-
Mark
Spike-Dependent Opsonization Indicates Both Dose-Dependent Inhibition of Phagocytosis and That Non-Neutralizing Antibodies Can Confer Protection to SARS-CoV-2
(
- Contribution to journal › Article
-
Mark
Landscape of surfaceome and endocytome in human glioma is divergent and depends on cellular spatial organization
2022) In Proceedings of the National Academy of Sciences of the United States of America 119(9). p.1-11(
- Contribution to journal › Article
-
Mark
Long-Read Sequencing Reveals Genetic Adaptation of Bartonella Adhesin A Among Different Bartonella henselae Isolates
(
- Contribution to journal › Article
- 2021
-
Mark
High-Sensitivity Assessment of Phagocytosis by Persistent Association-Based Normalization
(
- Contribution to journal › Article
-
Mark
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data
(
- Contribution to journal › Article
-
Mark
Host-pathogen adhesion as the basis of innovative diagnostics for emerging pathogens
(
- Contribution to journal › Scientific review
-
Mark
Distinct phenotypes of platelet, monocyte, and neutrophil activation occur during the acute and convalescent phase of COVID-19
(
- Contribution to journal › Article
-
Mark
Proteome profiling of recombinant DNase therapy in reducing NETs and aiding recovery in COVID-19 patients
(
- Contribution to journal › Article
-
Mark
Streptococcal protein SIC activates monocytes and induces inflammation
(
- Contribution to journal › Article
-
Mark
Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance
(
- Contribution to journal › Article
-
Mark
Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis
(
- Contribution to journal › Article
-
Mark
Extending the Proteomic Characterization of Candida albicans Exposed to Stress and Apoptotic Inducers through Data-Independent Acquisition Mass Spectrometry
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes Forms Serotype- and Local Environment-Dependent Interspecies Protein Complexes
(
- Contribution to journal › Article
-
Mark
Targeted selected reaction monitoring verifies histology specific peptide signatures in epithelial ovarian cancer
(
- Contribution to journal › Article
-
Mark
Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis
(
- Contribution to journal › Article
-
Mark
Protein signatures of remodeled airways in transplanted lungs with Bronchiolitis Obliterans Syndrome obtained using laser capture microdissection
(
- Contribution to journal › Article
-
Mark
Suggested treatment of serious complications to COVID-19 vaccination with IdeS, a bacterial antibody-cleaving enzyme
(
- Contribution to journal › Letter
-
Mark
A Systems View of the Heparan Sulfate Interactome
2021) In The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 69(2). p.105-119(
- Contribution to journal › Article
-
Mark
SEPARATION OF CLUSTERS OF GROUP A STREPTOCOCCI USING DETERMINISTIC LATERAL DISPLACEMENT
2021) 25th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2021 p.1201-1202(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
-
Mark
Quaternary structure modeling through chemical cross-linking mass spectrometry : Extending tx-ms jupyter reports
2021) In Journal of Visualized Experiments(
- Contribution to journal › Article
-
Mark
Thrombocytopenia with acute ischemic stroke and bleeding in a patient newly vaccinated with an adenoviral vector-based COVID-19 vaccine : COMMENT from Gruel et al.: RESPONSE from Kahn et al.
(
- Contribution to journal › Letter
-
Mark
The structure of human dermatan sulfate epimerase 1 emphasizes the importance of C5-epimerization of glucuronic acid in higher organisms
(
- Contribution to journal › Article
-
Mark
Multinodal Acoustic Trapping Enables High Capacity and High Throughput Enrichment of Extracellular Vesicles and Microparticles in miRNA and MS Proteomics Studies
(
- Contribution to journal › Article
-
Mark
Systematic detection of functional proteoform groups from bottom-up proteomic datasets
(
- Contribution to journal › Article
- 2020
-
Mark
Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactions
(
- Contribution to journal › Scientific review
-
Mark
Targeted mass spectrometry for Serum Amyloid A (SAA) isoform profiling in sequential blood samples from experimentally Staphylococcus aureus infected pigs
2020) In Journal of Proteomics(
- Contribution to journal › Article
- 2019
-
Mark
Rapid determination of quaternary protein structures in complex biological samples
(
- Contribution to journal › Article
-
Mark
The molecular basis of human igg-mediated enhancement of C4b-binding protein recruitment to group a streptococcus
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes evades adaptive immunity through specific IgG glycan hydrolysis
(
- Contribution to journal › Article
-
Mark
Computational proteomics with Jupyter and Python
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies
(
- Contribution to journal › Article
-
Mark
Automated Image-Based Quantification of Neutrophil Extracellular Traps Using NETQUANT
2019) In Journal of visualized experiments : JoVE(
- Contribution to journal › Article
- 2018
-
Mark
G-score : A function to solve the puzzle of modeling the protonation states of β-secretase binding pocket
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes Infection and the Human Proteome with a Special Focus on the Immunoglobulin G-cleaving Enzyme IdeS
(
- Contribution to journal › Article
-
Mark
Increased platelet activation occurs in cystic fibrosis patients and correlates to clinical status
(
- Contribution to journal › Article
-
Mark
NETQUANT: Automated Quantification of Neutrophil Extracellular Traps
(
- Contribution to journal › Article
- 2017
-
Mark
Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions
2017) In Proceedings of the National Academy of Sciences of the United States of America 114(40). p.10648-10653(
- Contribution to journal › Article
-
Mark
The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo
(
- Contribution to journal › Article
-
Mark
Targeted proteomics and absolute protein quantification for the construction of a stoichiometric host-pathogen surface density model
(
- Contribution to journal › Article
- 2016
-
Mark
Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics.
(
- Contribution to journal › Article
-
Mark
Coordinated integrin activation by actin-dependent force during T-cell migration
(
- Contribution to journal › Article
- 2015
-
Mark
Platelet-dependent neutrophil function is dysregulated by M protein from Streptococcus pyogenes.
(
- Contribution to journal › Article
- 2014
-
Mark
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.
(
- Contribution to journal › Article
-
Mark
A comprehensive analysis of the Streptococcus pyogenes and human plasma protein interaction network.
(
- Contribution to journal › Article
- 2012
-
Mark
Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes.
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes in human plasma: adaptive mechanisms analyzed by mass spectrometry based proteomics.
(
- Contribution to journal › Article