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- 2024
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Mark
Decoding of the surfaceome and endocytome in primary glioblastoma cells identifies potential target antigens in the hypoxic tumor niche
(
- Contribution to journal › Article
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Mark
Multimodal Mass Spectrometry Identifies a Conserved Protective Epitope in S. pyogenes Streptolysin O
(
- Contribution to journal › Article
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Mark
The hinge-engineered IgG1-IgG3 hybrid subclass IgGh47 potently enhances Fc-mediated function of anti-streptococcal and SARS-CoV-2 antibodies
(
- Contribution to journal › Article
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Mark
Population scale proteomics enables adaptive digital twin modelling in sepsis
2024)(
- Working paper/Preprint › Preprint in preprint archive
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Mark
Proteomic profiling reveals that ESR1 mutations enhance cyclin-dependent kinase signaling
(
- Contribution to journal › Article
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Mark
Quantification of adaptive immune responses against protein binding interfaces in the streptococcal M1 protein
2024) In Molecular and Cellular Proteomics(
- Contribution to journal › Article
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Mark
Peptide clustering enhances large-scale analyses and reveals proteolytic signatures in mass spectrometry data
(
- Contribution to journal › Article
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Mark
Multiplex genome editing eliminates the Warburg Effect without impacting growth rate in mammalian cells
2024) In bioRxiv : the preprint server for biology(
- Working paper/Preprint › Preprint in preprint archive
- 2023
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Mark
A human monoclonal antibody bivalently binding two different epitopes in streptococcal M protein mediates immune function
(
- Contribution to journal › Article
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Mark
Small-molecule-mediated OGG1 inhibition attenuates pulmonary inflammation and lung fibrosis in a murine lung fibrosis model
(
- Contribution to journal › Article
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Mark
Multienzyme deep learning models improve peptide de novo sequencing by mass spectrometry proteomics
(
- Contribution to journal › Article
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Mark
Proteogenomics decodes the evolution of human ipsilateral breast cancer
(
- Contribution to journal › Article
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Mark
Alveolar epithelial cells are competent producers of interstitial extracellular matrix with disease relevant plasticity in a human in vitro 3D model
(
- Contribution to journal › Article
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Mark
Phenotypic characterization of acoustically enriched extracellular vesicles from pathogen-activated platelets
(
- Contribution to journal › Article
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Mark
In Vivo Profiling of the Vascular Cell Surface Proteome in Murine Models of Bacteremia
(
- Chapter in Book/Report/Conference proceeding › Book chapter
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Mark
Generalized precursor prediction boosts identification rates and accuracy in mass spectrometry based proteomics
(
- Contribution to journal › Article
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Mark
A pharmacoproteomic landscape of organotypic intervention responses in Gram-negative sepsis
(
- Contribution to journal › Article
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Mark
Serum proteome profiles in patients treated with targeted temperature management after out-of-hospital cardiac arrest
(
- Contribution to journal › Article
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Mark
Quantification of heat shock proteins in the posterior interosseous nerve among subjects with type 1 and type 2 diabetes compared to healthy controls
(
- Contribution to journal › Article
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Mark
Acoustic trapping based high throughput isolation and characterization of pathogen activated platelet derived extracellular vesicles from plasma
2023) 27th International conference on miniaturized systems for chemistry and life sciences, MicroTAS 2023(
- Contribution to conference › Abstract
-
Mark
Characterization of acoustically isolated extracellular vesicles from pathogen activated platelets
2023) Nordic Proteomics Society meeting 2023(
- Contribution to conference › Abstract
-
Mark
Pathogen-driven degradation of endogenous and therapeutic antibodies during streptococcal infections
(
- Contribution to journal › Article
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Mark
Interpreting biologically informed neural networks for enhanced proteomic biomarker discovery and pathway analysis
(
- Contribution to journal › Article
- 2022
-
Mark
Distinct Serotypes of Streptococcal M Proteins Mediate Fibrinogen-Dependent Platelet Activation and Proinflammatory Effects
(
- Contribution to journal › Article
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Mark
Effective protein extraction combined with data independent acquisition analysis reveals a comprehensive and quantifiable insight into the proteomes of articular cartilage and subchondral bone
(
- Contribution to journal › Article
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Mark
Interaction of Bartonella henselae with Fibronectin Represents the Molecular Basis for Adhesion to Host Cells
(
- Contribution to journal › Article
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Mark
Invasive Streptococcal Infection Can Lead to the Generation of Cross-Strain Opsonic Antibodies
(
- Contribution to journal › Article
-
Mark
Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia
(
- Contribution to journal › Article
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Mark
Spike-Dependent Opsonization Indicates Both Dose-Dependent Inhibition of Phagocytosis and That Non-Neutralizing Antibodies Can Confer Protection to SARS-CoV-2
(
- Contribution to journal › Article
-
Mark
Landscape of surfaceome and endocytome in human glioma is divergent and depends on cellular spatial organization
2022) In Proceedings of the National Academy of Sciences of the United States of America 119(9). p.1-11(
- Contribution to journal › Article
-
Mark
Long-Read Sequencing Reveals Genetic Adaptation of Bartonella Adhesin A Among Different Bartonella henselae Isolates
(
- Contribution to journal › Article
- 2021
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Mark
Citrullination of extracellular histone H3.1 reduces antibacterial activity and exacerbates its proteolytic degradation
(
- Contribution to journal › Article
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Mark
Cheetah-MS: a web server to model protein complexes using tandem cross-linking mass spectrometry data
(
- Contribution to journal › Article
-
Mark
Quantitative proteomic analysis of human peripheral nerves from subjects with type 2 diabetes
(
- Contribution to journal › Article
-
Mark
Host-pathogen adhesion as the basis of innovative diagnostics for emerging pathogens
(
- Contribution to journal › Scientific review
-
Mark
Proteome profiling of recombinant DNase therapy in reducing NETs and aiding recovery in COVID-19 patients
(
- Contribution to journal › Article
-
Mark
Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance
(
- Contribution to journal › Article
-
Mark
Cerebrospinal fluid proteome maps detect pathogen-specific host response patterns in meningitis
(
- Contribution to journal › Article
-
Mark
Extending the Proteomic Characterization of Candida albicans Exposed to Stress and Apoptotic Inducers through Data-Independent Acquisition Mass Spectrometry
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes Forms Serotype- and Local Environment-Dependent Interspecies Protein Complexes
(
- Contribution to journal › Article
-
Mark
Targeted selected reaction monitoring verifies histology specific peptide signatures in epithelial ovarian cancer
(
- Contribution to journal › Article
-
Mark
Endothelial Heparan Sulfate Mediates Hepatic Neutrophil Trafficking and Injury during Staphylococcus aureus Sepsis
(
- Contribution to journal › Article
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Mark
Protein signatures of remodeled airways in transplanted lungs with Bronchiolitis Obliterans Syndrome obtained using laser capture microdissection
(
- Contribution to journal › Article
-
Mark
A Systems View of the Heparan Sulfate Interactome
2021) In The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society 69(2). p.105-119(
- Contribution to journal › Article
-
Mark
In vivo Cross-Linking MS of the Complement System MAC Assembled on Live Gram-Positive Bacteria
(
- Contribution to journal › Article
-
Mark
Structural determination of Streptococcus pyogenes M1 protein interactions with human immunoglobulin G using integrative structural biology
(
- Contribution to journal › Article
-
Mark
The structure of human dermatan sulfate epimerase 1 emphasizes the importance of C5-epimerization of glucuronic acid in higher organisms
(
- Contribution to journal › Article
-
Mark
Multinodal Acoustic Trapping Enables High Capacity and High Throughput Enrichment of Extracellular Vesicles and Microparticles in miRNA and MS Proteomics Studies
(
- Contribution to journal › Article
- 2020
-
Mark
Interaction with the host : the role of fibronectin and extracellular matrix proteins in the adhesion of Gram-negative bacteria
(
- Contribution to journal › Scientific review
-
Mark
Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactions
(
- Contribution to journal › Scientific review
-
Mark
Targeted mass spectrometry for Serum Amyloid A (SAA) isoform profiling in sequential blood samples from experimentally Staphylococcus aureus infected pigs
2020) In Journal of Proteomics(
- Contribution to journal › Article
-
Mark
Rapid multinodal acoustic trapping of extracellular vesicles for downstream mass spectrometry analysis
2020) 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2020 In MicroTAS 2020 - 24th International Conference on Miniaturized Systems for Chemistry and Life Sciences p.148-149(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
- 2019
-
Mark
Complement Activation Occurs at the Surface of Platelets Activated by Streptococcal M1 Protein and This Results in Phagocytosis of Platelets
(
- Contribution to journal › Article
-
Mark
The Human Salivary Antimicrobial Peptide Profile according to the Oral Microbiota in Health, Periodontitis and Smoking
(
- Contribution to journal › Article
-
Mark
Rapid determination of quaternary protein structures in complex biological samples
(
- Contribution to journal › Article
-
Mark
Matrisome Properties of Scaffolds Direct Fibroblasts in Idiopathic Pulmonary Fibrosis
(
- Contribution to journal › Article
-
Mark
Identification of two abundant Aerococcus urinae cell wall-anchored proteins
(
- Contribution to journal › Article
-
Mark
Neutrophil extracellular traps in the central nervous system hinder bacterial clearance during pneumococcal meningitis
(
- Contribution to journal › Article
-
Mark
Greedy de novo motif discovery to construct motif repositories for bacterial proteomes
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes evades adaptive immunity through specific IgG glycan hydrolysis
(
- Contribution to journal › Article
-
Mark
A quantitative Streptococcus pyogenes-human protein-protein interaction map reveals localization of opsonizing antibodies
(
- Contribution to journal › Article
- 2018
-
Mark
Quantitative proteomic characterization of the lung extracellular matrix in chronic obstructive pulmonary disease and idiopathic pulmonary fibrosis
(
- Contribution to journal › Article
-
Mark
Quantifying extracellular matrix turnover in human lung scaffold cultures
(
- Contribution to journal › Article
-
Mark
Streptococcus pyogenes Infection and the Human Proteome with a Special Focus on the Immunoglobulin G-cleaving Enzyme IdeS
(
- Contribution to journal › Article
-
Mark
Comprehensive Mass Spectrometric Survey of Streptococcus pyogenes Subcellular Proteomes
(
- Contribution to journal › Article
-
Mark
Development of large-scale cross-linking mass spectrometry
(
- Contribution to journal › Scientific review
-
Mark
Leucocyte recruitment and molecular fortification of keratinocytes triggered by streptococcal M1 protein
(
- Contribution to journal › Article
- 2017
-
Mark
Analysis of bacterial surface interactions with mass spectrometry-based proteomics
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Comprehensive Proteomic Characterization of Ontogenic Changes in Hematopoietic Stem and Progenitor Cells
(
- Contribution to journal › Article
-
Mark
Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics
(
- Contribution to journal › Article
-
Mark
The TLR2 Antagonist Staphylococcal Superantigen-Like Protein 3 Acts as a Virulence Factor to Promote Bacterial Pathogenicity in vivo
(
- Contribution to journal › Article
-
Mark
Quantitative proteomic characterization of lung-MSC and bone marrow-MSC using DIA-mass spectrometry
(
- Contribution to journal › Article
-
Mark
Targeted proteomics and absolute protein quantification for the construction of a stoichiometric host-pathogen surface density model
(
- Contribution to journal › Article
- 2016
-
Mark
Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics.
(
- Contribution to journal › Article
-
Mark
Structure and Interactions of a Dimeric Variant of sHIP, a Novel Virulence Determinant of Streptococcus pyogenes.
(
- Contribution to journal › Article
-
Mark
Quantitative mass spectrometry to study inflammatory cartilage degradation and resulting interactions with the complement system
(
- Contribution to journal › Article
-
Mark
Cancer associated proteins in blood plasma : Determining normal variation
(
- Contribution to journal › Article
-
Mark
Differential compartmentalization of Streptococcus pyogenes virulence factors and host protein binding properties as a mechanism for host adaptation
(
- Contribution to journal › Article
-
Mark
Dinosaur : A Refined Open-Source Peptide MS Feature Detector
(
- Contribution to journal › Article
-
Mark
Saliva-Induced Clotting Captures Streptococci : Novel Roles for Coagulation and Fibrinolysis in Host Defense and Immune Evasion
(
- Contribution to journal › Article
- 2015
-
Mark
Complete Removal of Extracellular IgG Antibodies in a Randomized Dose-Escalation Phase I Study with the Bacterial Enzyme IdeS - A Novel Therapeutic Opportunity.
(
- Contribution to journal › Article
-
Mark
A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery
(
- Contribution to journal › Article
-
Mark
Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.
(
- Contribution to journal › Article
-
Mark
Quantitative proteogenomics of human pathogens using DIA-MS.
(
- Contribution to journal › Article
-
Mark
DIANA - algorithmic improvements for analysis of data-independent acquisition MS data.
(
- Contribution to journal › Article
-
Mark
Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis
(
- Contribution to journal › Article
- 2014
-
Mark
Data processing methods and quality control strategies for label-free LC-MS protein quantification.
(
- Contribution to journal › Scientific review
-
Mark
Surface proteins of the Group G Streptococcus in different phases of growth: patterns of production and implications for the host-bacteria relationship.
(
- Contribution to journal › Article
-
Mark
Targeted mass spectrometry analysis of neutrophil-derived proteins released during sepsis progression.
(
- Contribution to journal › Article
-
Mark
OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data.
(
- Contribution to journal › Article
-
Mark
A comprehensive analysis of the Streptococcus pyogenes and human plasma protein interaction network.
(
- Contribution to journal › Article
-
Mark
Numerical compression schemes for proteomics mass spectrometry data.
(
- Contribution to journal › Article
-
Mark
Functional and Structural Properties of a Novel Protein and Virulence Factor (sHIP) in Streptococcus pyogenes.
(
- Contribution to journal › Article
- 2013
-
Mark
Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress
(
- Contribution to journal › Article
-
Mark
Automated quality control system for LC-SRM setups.
(
- Contribution to journal › Article
-
Mark
A Novel Role for Pro-Coagulant Microvesicles in the Early Host Defense against Streptococcus pyogenes
(
- Contribution to journal › Article
- 2012
-
Mark
Different fractions of human serum glycoproteins bind galectin-1 or galectin-8, and their ratio may provide a refined biomarker for pathophysiological conditions in cancer and inflammatory disease.
(
- Contribution to journal › Article
-
Mark
Proteome-wide selected reaction monitoring assays for the human pathogen Streptococcus pyogenes.
(
- Contribution to journal › Article
-
Mark
Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.
(
- Contribution to journal › Article
-
Mark
Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.
(
- Contribution to journal › Article