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- 2024
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Mark
WOMBAT-P : Benchmarking Label-Free Proteomics Data Analysis Workflows
(
- Contribution to journal › Article
- 2023
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Mark
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems
(
- Contribution to journal › Article
- 2022
-
Mark
MSLibrarian: Optimized Predicted Spectral Libraries for Data-Independent Acquisition Proteomics
(
- Contribution to journal › Article
-
Mark
Deep Time Paleoproteomics : Looking Forward
(
- Contribution to journal › Scientific review
-
Mark
A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics
(
- Contribution to journal › Article
- 2021
-
Mark
Proteomic data analysis for differential profiling of the autoimmune diseases SLE, RA, SS, and ANCA-associated vasculitis
(
- Contribution to journal › Article
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Mark
Proteogenomic Workflow Reveals Molecular Phenotypes Related to Breast Cancer Mammographic Appearance
(
- Contribution to journal › Article
-
Mark
High-Resolution Proteomic Profiling Shows Sexual Dimorphism in Zebrafish Heart-Associated Proteins
(
- Contribution to journal › Article
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Mark
Proteomic Workflows for High-Quality Quantitative Proteome and Post-Translational Modification Analysis of Clinically Relevant Samples from Formalin-Fixed Paraffin-Embedded Archives
(
- Contribution to journal › Article
- 2019
-
Mark
Assessing Automated Sample Preparation Technologies for High-Throughput Proteomics of Frozen Well Characterized Tissues from Swedish Biobanks
(
- Contribution to journal › Article
-
Mark
NormalyzerDE : Online Tool for Improved Normalization of Omics Expression Data and High-Sensitivity Differential Expression Analysis
(
- Contribution to journal › Article
-
Mark
Mining the Proteome Associated with Rheumatic and Autoimmune Diseases
(
- Contribution to journal › Article
- 2018
-
Mark
Comprehensive Mass Spectrometric Survey of Streptococcus pyogenes Subcellular Proteomes
(
- Contribution to journal › Article
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Mark
Quantitative Assessment of Urea In-Solution Lys-C/Trypsin Digestions Reveals Superior Performance at Room Temperature over Traditional Proteolysis at 37 °C.
(
- Contribution to journal › Article
-
Mark
Biology/Disease-Driven Initiative on Protein-Aggregation Diseases of the Human Proteome Project : Goals and Progress to Date
(
- Contribution to journal › Article
- 2017
-
Mark
Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics
(
- Contribution to journal › Article
-
Mark
Quantitation of 87 Proteins by nLC-MRM/MS in Human Plasma : Workflow for Large-Scale Analysis of Biobank Samples
(
- Contribution to journal › Article
-
Mark
Blood Metabolic Signatures of Body Mass Index : A Targeted Metabolomics Study in the EPIC Cohort
(
- Contribution to journal › Article
-
Mark
Identification of a Novel Autoimmune Peptide Epitope of Prostein in Prostate Cancer
(
- Contribution to journal › Article
-
Mark
The Immune System and the Proteome
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
FK506, an Immunosuppressive Drug, Induces Autophagy by Binding to the V-ATPase Catalytic Subunit A in Neuronal Cells
(
- Contribution to journal › Article
- 2016
-
Mark
Targeted MS Assay Predicting Tamoxifen Resistance in Estrogen-Receptor-Positive Breast Cancer Tissues and Sera
(
- Contribution to journal › Article
-
Mark
Targeted Proteomics Approach for Precision Plant Breeding
(
- Contribution to journal › Article
-
Mark
Dinosaur : A Refined Open-Source Peptide MS Feature Detector
(
- Contribution to journal › Article
-
Mark
Elucidating the Molecular Composition of Cartilage by Proteomics
(
- Contribution to journal › Article
- 2015
-
Mark
Development of Phage-Based Antibody Fragment Reagents for Affinity Enrichment of Bacterial Immunoglobulin G Binding Proteins.
(
- Contribution to journal › Article
-
Mark
Systematic Identification of Single Amino Acid Variants in Glioma Stem-Cell-Derived Chromosome 19 Proteins
(
- Contribution to journal › Article
-
Mark
In vitro Transcription/Translation System: A Versatile Tool in the Search for Missing Proteins
(
- Contribution to journal › Article
-
Mark
Use of ENCODE Resources to Characterize Novel Proteoforms and Missing Proteins in the Human Proteome
(
- Contribution to journal › Article
-
Mark
An Integrated Workflow for Multiplex CSF Proteomics and Peptidomics-Identification of Candidate Cerebrospinal Fluid Biomarkers of Alzheimer's Disease
(
- Contribution to journal › Article
-
Mark
Molecular Portrait of Breast-Cancer-Derived Cell Lines Reveals Poor Similarity with Tumors.
(
- Contribution to journal › Article
-
Mark
A Combined Shotgun and Targeted Mass Spectrometry Strategy for Breast Cancer Biomarker Discovery
(
- Contribution to journal › Article
-
Mark
Targeted Proteomic Analyses of Nasal Lavage Fluid in Persulfate-Challenged Hairdressers with Bleaching Powder-Associated Rhinitis
(
- Contribution to journal › Article
-
Mark
Integration of Proteomics and Transcriptomics Data Sets for the Analysis of a Lymphoma B-Cell Line in the Context of the Chromosome-Centric Human Proteome Project
(
- Contribution to journal › Article
-
Mark
Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project
(
- Contribution to journal › Article
-
Mark
Data Processing Has Major Impact on the Outcome of Quantitative Label-Free LC-MS Analysis
(
- Contribution to journal › Article
-
Mark
Integrated Transcriptomic and Glycomic Profiling of Glioma Stem Cell Xenografts
(
- Contribution to journal › Article
-
Mark
ESI-MS/MS and MALDI-IMS Localization Reveal Alterations in Phosphatidic Acid, Diacylglycerol, and DHA in Glioma Stem Cell Xenografts
(
- Contribution to journal › Article
- 2014
-
Mark
Confirmation of Protein Biomarkers of Corticosteroids Treatment in Veal Calves Sampled under Field Conditions
(
- Contribution to journal › Article
-
Mark
Normalyzer: A Tool for Rapid Evaluation of Normalization Methods for Omics Data Sets
(
- Contribution to journal › Article
-
Mark
Genome-wide Proteomics, Chromosome-centric Human Proteome Project (C-HPP), Part II
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Four Areas of Engagement Requiring Strengthening in Modern Proteomics Today.
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Biorepository Regulatory Frameworks: Building Parallel Resources That Both Promote Scientific Investigation and Protect Human Subjects
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Assessment of Peptide Chemical Modifications on the Development of an Accurate and Precise Multiplex Selected Reaction Monitoring Assay for Apolipoprotein E Isoforms
(
- Contribution to journal › Article
-
Mark
Analytical Validation Considerations of Multiplex Mass-Spectrometry-Based Proteomic Platforms for Measuring Protein Biomarkers
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Feasibility Study on Measuring Selected Proteins in Malignant Melanoma Tissue by SRM Quantification.
(
- Contribution to journal › Article
-
Mark
AFFIRM – a multiplexed immunoaffinity platform that combines recombinant antibody fragments and LC-SRM analysis
(
- Contribution to journal › Article
-
Mark
Quantitative Label-Free Phosphoproteomics of Six Different Life Stages of the Late Blight Pathogen Phytophthora infestans Reveals Abundant Phosphorylation of Members of the CRN Effector Family
(
- Contribution to journal › Article
-
Mark
Integrated Chromosome 19 Transcriptomic and Proteomic Datasets Derived from Six Glioma-Derived Cancer Stem Cell Lines
(
- Contribution to journal › Article
- 2013
-
Mark
Contribution of Antibody-based Protein Profiling to the Human Chromosome-centric Proteome Project (C-HPP)
(
- Contribution to journal › Article
-
Mark
Protein Expression Profiling of Formalin-Fixed Paraffin-Embedded Tissue Using Recombinant Antibody Microarrays
(
- Contribution to journal › Article
-
Mark
Quantitative Proteomics Profiling of Primary Lung Adenocarcinoma Tumors Reveals Functional Perturbations in Tumor Metabolism
(
- Contribution to journal › Article
-
Mark
Chromosome 19 Annotations with Disease Speciation - A First Report from the Global Research Consortium
(
- Contribution to journal › Article
-
Mark
Determination of Phosphorylation Sites in the DivIVA Cytoskeletal Protein of Streptomyces coelicolor by Targeted LC-MS/MS
(
- Contribution to journal › Article
-
Mark
Quantification of Human Kallikrein-2 in Clinical Samples by Selected Reaction Monitoring
(
- Contribution to journal › Article
-
Mark
The Lecticans of Mammalian Brain Perineural Net Are O-Mannosylated
(
- Contribution to journal › Article
-
Mark
Experimental Models to Study Drug Distributions in Tissue Using MALDI Mass Spectrometry
(
- Contribution to journal › Article
-
Mark
A First Step Toward Completion of a Genome-Wide Characterization of the Human Proteome.
(
- Contribution to journal › Article
-
Mark
Blood Plasma Reference Material – A Global Resource for Proteomic Research
(
- Contribution to journal › Article
-
Mark
Quantitative proteomic analysis of microdissected breast cancer tissues : comparison of label-free and SILAC-based quantification with shotgun, directed, and targeted MS approaches
(
- Contribution to journal › Article
-
Mark
A modified database search strategy leads to improved identification of in vitro brominated peptides spiked into a complex proteomic sample
(
- Contribution to journal › Article
-
Mark
Label-free quantitative proteomics reveals differentially regulated proteins in experimental gingivitis
(
- Contribution to journal › Article
- 2012
-
Mark
Characterization of the Lipid Droplet Proteome of a Clonal Insulin-producing β-Cell Line (INS-1 832/13).
(
- Contribution to journal › Article
-
Mark
Automated Selected Reaction Monitoring Software for Accurate Label-Free Protein Quantification.
(
- Contribution to journal › Article
-
Mark
Multimodel Pathway Enrichment Methods for Functional Evaluation of Expression Regulation.
(
- Contribution to journal › Article
-
Mark
Standardization and Utilization of Biobank Resources in Clinical Protein Sciene with Examples of Emerging Applications
(
- Contribution to journal › Article
-
Mark
Protein Expression Changes in Ovarian Cancer during the Transition from Benign to Malignant.
(
- Contribution to journal › Article
-
Mark
Relative Quantification of Membrane Proteins in Wild-Type and Prion Protein (PrP)-Knockout Cerebellar Granule Neurons
(
- Contribution to journal › Article
-
Mark
Critical Comparison of Multidimensional Separation Methods for Increasing Protein Expression Coverage
(
- Contribution to journal › Article
-
Mark
Standard Guidelines for the Chromosome-Centric Human Proteome Project
(
- Contribution to journal › Article
-
Mark
Automated Workflow for Large-Scale Selected Reaction Monitoring Experiments
(
- Contribution to journal › Article
-
Mark
Screening Method Using Selected Reaction Monitoring for Targeted Proteomics Studies of Nasal Lavage Fluid.
2012) In Journal of Proteome Research(
- Contribution to journal › Article
- 2011
-
Mark
Coomassie Staining as Loading Control in Western Blot Analysis
(
- Contribution to journal › Article
-
Mark
A Clinician View and Experience of Proteomic Studies in the Light of Lung Cancer in Japanese Healthcare
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Protein Expression Changes in Skeletal Muscle in Response to Growth Promoter Abuse in Beef Cattle
(
- Contribution to journal › Article
-
Mark
Hunting for Protein Markers of Hypoxia by Combining Plasma Membrane Enrichment with a New Approach to Membrane Protein Analysis
(
- Contribution to journal › Article
-
Mark
The International Proteomics Tutorial Programme - reaching out to the next generation proteome scientists
(
- Contribution to journal › Article
-
Mark
Discovery of a novel B-Raf fusion protein related to c-Met drug resistance
(
- Contribution to journal › Article
-
Mark
Genomics, transcriptomics, and peptidomics of Daphnia pulex neuropeptides and protein hormones
(
- Contribution to journal › Article
- 2010
-
Mark
Proteomics and disease revisited: the challenge of providing proteomic tools into clinical practice.
(
- Contribution to journal › Letter
-
Mark
Aptamer microarray mediated capture and mass spectrometry identification of biomarker in serum samples.
(
- Contribution to journal › Article
-
Mark
Time-Dependent Proteomic iTRAQ Analysis of Nasal Lavage of Hairdressers Challenged by Persulfate.
(
- Contribution to journal › Article
-
Mark
Glycomic and transcriptomic response of GSC11 glioblastoma stem cells to STAT3 phosphorylation inhibition and serum-induced differentiation
(
- Contribution to journal › Article
-
Mark
Quantitative phosphoproteomic analysis of the STAT3/IL-6/HIF1alpha signaling network : an initial study in GSC11 glioblastoma stem cells
(
- Contribution to journal › Article
- 2009
-
Mark
Quantification of Membrane Proteins Using Nonspecific Protease Digestions
(
- Contribution to journal › Article
-
Mark
Expression of Helix pomatia Lectin Binding Glycoproteins in Women with Breast Cancer in Relationship to Their Mood Group Phenotypes
(
- Contribution to journal › Article
-
Mark
Expression of a Core 3 Disialyl-Le(x) Hexasaccharide in Human Colorectal Cancers: A Potential Marker of Malignant Transformation in Colon.
2009) In Journal of Proteome Research(
- Contribution to journal › Article
-
Mark
Omics Analyses Reveal a Potential Link between Hormone-Sensitive Lipase and Polyamine Metabolism.
(
- Contribution to journal › Article
-
Mark
The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data
(
- Contribution to journal › Article
- 2008
-
Mark
Metabolomic and proteomic analysis of a clonal insulin-producing beta-cell line (INS-1 832/13).
(
- Contribution to journal › Article
-
Mark
Mass Spectrometry Analysis of a Protein Kinase CK2 beta Subunit Interactome Isolated from Mouse Brain by Affinity Chromatography.
(
- Contribution to journal › Article
-
Mark
Membrane protein identification: N-terminal labeling of nontryptic membrane protein peptides facilitates database searching
(
- Contribution to journal › Article
-
Mark
Design of recombinant antibody microarrays for cell surface membrane proteomics
(
- Contribution to journal › Article
-
Mark
ENSAM: Europium Nanoparticles for Signal Enhancement of Antibody Microarrays on Nanoporous Silicon.
(
- Contribution to journal › Article
- 2007
-
Mark
Development of reagents for differential protein quantitation by subtractive parent (precursor) ion scanning
(
- Contribution to journal › Article
-
Mark
Proteomic variation is as large within as between strawberry varieties
(
- Contribution to journal › Article
-
Mark
Proteomic profiling of plasma in Huntington's disease reveals neuroinflammatory activation and biomarker candidates
(
- Contribution to journal › Article
-
Mark
Design of recombinant antibody microarrays for serum protein profiling: Targeting of complement proteins
(
- Contribution to journal › Article
-
Mark
In-Source Decay Causes Artifacts in SELDI-TOF MS Spectra.
(
- Contribution to journal › Article
-
Mark
Comparative Time-Dependent Analysis of Potential Inflammation Biomarkers in Lymphoma-Bearing SJL Mice.
(
- Contribution to journal › Article
-
Mark
Large-Scale Proteomics Analysis of Human Ovarian Cancer for Biomarkers
(
- Contribution to journal › Article
-
Mark
Altered chaperone and protein turnover regulators expression in cultured skin fibroblasts from type 1 diabetes mellitus with nephropathy
(
- Contribution to journal › Article
-
Mark
A probabilistic treatment of the missing spot problem in 2D gel electrophoresis experiments
(
- Contribution to journal › Article
-
Mark
Hypothermia Affects Translocation of Numerous Cytoplasmic Proteins Following Global Cerebral Ischemia.
(
- Contribution to journal › Article
-
Mark
Automating MALDI Sample Plate Loading
(
- Contribution to journal › Article
-
Mark
Proteomic investigation of glioblastoma cell lines treated with wild-type p53 and cytotoxic chemotherapy demonstrates an association between galectin-1 and p53 expression
(
- Contribution to journal › Article
-
Mark
14-3-3 expression in denervated hippocampus after entorhinal cortex lesion assessed by culture-derived isotope tags in quantitative proteomics
(
- Contribution to journal › Article
- 2006
-
Mark
Aqueous two-phase partitioning for proteomic monitoring of cell surface biomarkers in human peripheral blood mononuclear cells
(
- Contribution to journal › Article
-
Mark
Miniaturized solid-phase extraction and sample preparation for MALDI MS using a microfabricated integrated selective enrichment target
(
- Contribution to journal › Article
-
Mark
Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra
(
- Contribution to journal › Article
-
Mark
One-step fractionation of complex proteomes enables detection of low abundant analytes using antibody-based microarrays
(
- Contribution to journal › Article
-
Mark
140 mouse brain proteins identified by Ca2+-calmodulin affinity chromatography and tandem mass spectrometry.
(
- Contribution to journal › Article
-
Mark
Inflammatory response in white adipose tissue in the non-obese hormone-sensitive lipase null mouse model.
(
- Contribution to journal › Article
-
Mark
Specific haptoglobin expression in bronchoalveolar lavage during differentiation of circulating fibroblast progenitor cells in mild asthma
(
- Contribution to journal › Article
-
Mark
Comparison of MS/MS methods for protein identification from 2D-PAGE
(
- Contribution to journal › Article
-
Mark
Characterization of the outer membrane protein profile from disease-related Helicobacter pylori isolates by subcellular fractionation and nano-LC FT-ICR MS analysis
(
- Contribution to journal › Article
-
Mark
Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis
(
- Contribution to journal › Article
- 2005
-
Mark
Reproducibility of tryptic digestion investigated by quantitative fourier transform ion cyclotron resonance mass spectrometry
(
- Contribution to journal › Article
-
Mark
Automated protein identification by the combination of MALDI MS and MS/MS spectra from different instruments
(
- Contribution to journal › Article
-
Mark
Discovery of Biomarker Candidates within Disease by Protein Profiling: Principles and Concepts.
(
- Contribution to journal › Article
-
Mark
Automated PreScan function for scanning fluorescently stained 2D-PAGE gels
(
- Contribution to journal › Article
-
Mark
The protein expression of Streptococcus pyogenes is significantly influenced by human plasma.
(
- Contribution to journal › Article
-
Mark
Prefractionation of cerebrospinal fluid to enhance glycoprotein concentration prior to structural determination with FT-ICR mass spectrometry
(
- Contribution to journal › Article
- 2004
-
Mark
Proteome annotations and identifications of the human pulmonary fibroblast.
(
- Contribution to journal › Article
-
Mark
Linking proteins to disease processes
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Exploring the context of the lung proteome within the airway mucosa following allergen challenge.
(
- Contribution to journal › Scientific review
-
Mark
Integrated protein microchip assay with dual fluorescent- and MALDI read-out
(
- Contribution to journal › Article
-
Mark
Proteomics and leukocytes: an approach to understanding potential molecular mechanisms of inflammatory responses.
(
- Contribution to journal › Scientific review
-
Mark
Proteomics and disease - The challenges for technology and discovery
(
- Contribution to journal › Article
- 2003
-
Mark
Automating gel image acquisition
(
- Contribution to journal › Article
-
Mark
Structural analysis of 2D-gel-separated glycoproteins from human cerebrospinal fluid by tandem high-resolution mass spectrometry
(
- Contribution to journal › Article
- 2002
-
Mark
Proteomic 2DE database for spot selection, automated annotation, and data analysis
(
- Contribution to journal › Article