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- 2024
-
Mark
A time course analysis through diapause reveals dynamic temporal patterns of microRNAs associated with endocrine regulation in the butterfly Pieris napi
2024) In Molecular Ecology(
- Contribution to journal › Article
-
Mark
Proteomic analysis of Parkinson’s disease mechanism and biomarkers
2024)(
- Thesis › Doctoral thesis (compilation)
-
Mark
T-cell commitment inheritance—an agent-based multi-scale model
(
- Contribution to journal › Article
-
Mark
Phenotypic characterization and candidate gene analysis of a short kernel and brassinosteroid insensitive mutant from hexaploid oat (Avena sativa)
(
- Contribution to journal › Article
-
Mark
Identification of microbial pathogens in Neolithic Scandinavian humans
(
- Contribution to journal › Article
-
Mark
Epigenetic modulators link mitochondrial redox homeostasis to cardiac function in a sex-dependent manner
(
- Contribution to journal › Article
-
Mark
Machine learning evaluation for identification of M-proteins in human serum
(
- Contribution to journal › Article
-
Mark
Pathogen-mediated selection in the immune system of rodents : Exploring selection targets, functional effects and trade-offs
2024)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Comparison of histological delineations of medial temporal lobe cortices by four independent neuroanatomy laboratories
2024) In Hippocampus(
- Contribution to journal › Article
-
Mark
What is a blink? : Classifying and characterizing blinks in eye openness signals
2024) In Behavior Research Methods(
- Contribution to journal › Article
-
Mark
Targeting the stressed tumor niche of glioblastoma: Tumor microenvironment and surface antigens
2024) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
-
Mark
PARKIN is not required to sustain OXPHOS function in adult mammalian tissues
(
- Contribution to journal › Article
-
Mark
Conservation biological control in agricultural landscapes at the interface between ecology and evolution : The importance of land-use-mediated bottom-up ecological effects and eco-evolutionary dynamics
2024)(
- Thesis › Doctoral thesis (compilation)
-
Mark
A global initiative for ecological and evolutionary hologenomics
(
- Contribution to journal › Article
-
Mark
Towards Precision Oncology : Advancing Multiomic Biomarker Discovery with Mass Spectrometry Proteomics
2024)(
- Thesis › Doctoral thesis (compilation)
-
Mark
The fifth international hackathon for developing computational cloud-based tools and resources for pan-structural variation and genomics
(
- Contribution to journal › Article
-
Mark
Transcriptome analysis of avian livers reveals different molecular changes to three urban pollutants : Soot, artificial light at night and noise
(
- Contribution to journal › Article
- 2023
-
Mark
Historical RNA expression profiles from the extinct Tasmanian tiger
(
- Contribution to journal › Article
-
Mark
VariBench, new variation benchmark categories and data sets
(
- Contribution to journal › Article
-
Mark
Preoperative ctDNA Levels Are Associated With Poor Overall Survival in Patients With Ovarian Cancer
(
- Contribution to journal › Article
-
Mark
Expanding the genetic toolbox of Rhodotorula toruloides by identification and validation of six novel promoters induced or repressed under nitrogen starvation
(
- Contribution to journal › Article
-
Mark
Modeling cancer’s ecological and evolutionary dynamics
(
- Contribution to journal › Article
-
Mark
805P Tumor-informed ctDNA detection as a predictive marker for postoperative residual disease in epithelial ovarian cancer: A feasibility study
(
- Contribution to journal › Published meeting abstract
-
Mark
Computational modelling in systems biology: from rewriting cell fates to detecting tumours
2023)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Protein family neighborhood analyzer-ProFaNA
(
- Contribution to journal › Article
-
Mark
AliGater : a framework for the development of bioinformatic pipelines for large-scale, high-dimensional cytometry data
(
- Contribution to journal › Article
-
Mark
BALDR : A Web-based platform for informed comparison and prioritization of biomarker candidates for type 2 diabetes mellitus
(
- Contribution to journal › Article
-
Mark
A Mitosome With Distinct Metabolism in the Uncultured Protist Parasite Paramikrocytos canceri (Rhizaria, Ascetosporea)
(
- Contribution to journal › Article
-
Mark
The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin-antitoxin and related phage defense systems
2023) In Proceedings of the National Academy of Sciences of the United States of America 120(33). p.1-12(
- Contribution to journal › Article
-
Mark
uORF4u : a tool for annotation of conserved upstream open reading frames
(
- Contribution to journal › Article
-
Mark
AIRR community curation and standardised representation for immunoglobulin and T cell receptor germline sets
(
- Contribution to journal › Article
-
Mark
Rapid Profiling of Protein Complex Reorganization in Perturbed Systems
(
- Contribution to journal › Article
-
Mark
Annotating and making use of the Avena sativa cv. Sang reference genome
2023)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Abstract 5710: Detection and monitoring of t(11;14) in liquid biopsies from patients with relapsed/refractory multiple myeloma treated with venetoclax-based regimens
(
- Contribution to journal › Published meeting abstract
-
Mark
Generalized precursor prediction boosts identification rates and accuracy in mass spectrometry based proteomics
(
- Contribution to journal › Article
-
Mark
Sag-rad : A Method for Single-Cell Population Genomics of Unicellular Eukaryotes
(
- Contribution to journal › Article
-
Mark
Roadmap to the study of gene and protein phylogeny and evolution—A practical guide
(
- Contribution to journal › Article
-
Mark
AI-Driven Drug Response Prediction for Personalized Cancer Medicine
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Identification of Novel Biomarkers for Response to Preoperative Chemoradiation in Locally Advanced Rectal Cancer with Genetic Algorithm–Based Gene Selection
(
- Contribution to journal › Article
-
Mark
A draft Diabrotica virgifera virgifera genome : insights into control and host plant adaption by a major maize pest insect
(
- Contribution to journal › Article
-
Mark
A model of cue integration as vector summation in the insect brain
(
- Contribution to journal › Article
- 2022
-
Mark
Genetic Predisposition to Sporadic and Familial Multiple Myeloma
2022) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
-
Mark
The genome sequence of the white admiral, Limenitis camilla (Linnaeus, 1764)
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
A data-driven biocomputing pipeline with meta-analysis on high throughput transcriptomics to identify genome-wide miRNA markers associated with type 2 diabetes
(
- Contribution to journal › Article
-
Mark
Clinical associations of ESR2 (estrogen receptor beta) expression across thousands of primary breast tumors
(
- Contribution to journal › Article
-
Mark
Alternative splicing modulation by G-quadruplexes
(
- Contribution to journal › Article
-
Mark
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
(
- Contribution to journal › Article
-
Mark
PRC2-mediated repression is essential to maintain identity and function of differentiated dopaminergic and serotonergic neurons
(
- Contribution to journal › Article
-
Mark
Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Analysing high-throughput sequencing data in Python with HTSeq 2.0
(
- Contribution to journal › Article
-
Mark
High-throughput muscle fiber typing from RNA sequencing data
(
- Contribution to journal › Article
-
Mark
MHCtools – an R package for MHC high-throughput sequencing data : Genotyping, haplotype and supertype inference, and downstream genetic analyses in non-model organisms
2022) In Molecular Ecology Resources(
- Contribution to journal › Article
-
Mark
ProTstab2 for Prediction of Protein Thermal Stabilities
(
- Contribution to journal › Article
-
Mark
An analytical pipeline to support robust research on the ecology, evolution, and function of floral volatiles
(
- Contribution to journal › Article
-
Mark
Rhizobium etli CFN42 proteomes showed isoenzymes in free-living and symbiosis with a different transcriptional regulation inferred from a transcriptional regulatory network
(
- Contribution to journal › Article
- 2021
-
Mark
Reindeer control over subarctic treeline alters soil fungal communities with potential consequences for soil carbon storage
(
- Contribution to journal › Article
-
Mark
A community effort to identify and correct mislabeled samples in proteogenomic studies
(
- Contribution to journal › Article
-
Mark
Preexisting Somatic Mutations of Estrogen Receptor Alpha (ESR1) in Early-Stage Primary Breast Cancer
(
- Contribution to journal › Article
-
Mark
Modeling Nonlinear Dendritic Processing of Facilitation in a Dragonfly Target-Tracking Neuron
(
- Contribution to journal › Article
-
Mark
FS-GBDT : identification multicancer-risk module via a feature selection algorithm by integrating Fisher score and GBDT
(
- Contribution to journal › Article
-
Mark
The impact of cross-kingdom molecular forensics on genetic privacy
(
- Contribution to journal › Article
-
Mark
Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing
(
- Contribution to journal › Article
-
Mark
Multi-scale Dynamical Modeling of T Cell Development from an Early Thymic Progenitor State to Lineage Commitment
(
- Contribution to journal › Article
-
Mark
Systematics for types and effects of RNA variations
(
- Contribution to journal › Article
-
Mark
Quality issues in georeferencing : From physical collections to digital data repositories for ecological research
(
- Contribution to journal › Letter
-
Mark
RNA Sequencing for Molecular Diagnostics in Breast Cancer
2021) In Lund University, Faculty of Medicine Doctoral Dissertation Series(
- Thesis › Doctoral thesis (compilation)
-
Mark
Contaminations contaminate common databases
(
- Contribution to journal › Article
-
Mark
A quantitative model of cellular decision making in direct neuronal reprogramming
(
- Contribution to journal › Article
-
Mark
Role of CRISPR/Cas9 and other gene editing/engineering technology in intestine diseases
2021) p.75-86(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
PEPRF : Identification of Essential Proteins by Integrating Topological Features of PPI Network and Sequence-based Features via Random Forest
(
- Contribution to journal › Article
-
Mark
Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
(
- Contribution to journal › Article
-
Mark
ZEAL : protein structure alignment based on shape similarity
(
- Contribution to journal › Article
-
Mark
The Sedimentary Geochemistry and Paleoenvironments Project
(
- Contribution to journal › Article
-
Mark
A unified platform to manage, share, and archive morphological and functional data in insect neuroscience
(
- Contribution to journal › Article
-
Mark
ArGSLab : a tool for analyzing experimental or simulated particle networks
(
- Contribution to journal › Article
-
Mark
The value of human data annotation for machine learning based anomaly detection in environmental systems
(
- Contribution to journal › Article
- 2020
-
Mark
Variation benchmark datasets : update, criteria, quality and applications
(
- Contribution to journal › Article
-
Mark
An integrated transcriptomic- and proteomic-based approach to evaluate the human skin sensitization potential of glyphosate and its commercial agrochemical formulations
(
- Contribution to journal › Article
-
Mark
Heritability of Caries Scores, Trajectories, and Disease Subtypes
(
- Contribution to journal › Article
-
Mark
Panel 1: Biotechnology, biomedical engineering and new models of otitis media
2020) 20th International Symposium on Recent Advances in Otitis Media In International Journal of Pediatric Otorhinolaryngology 130(1).(
- Contribution to journal › Article
-
Mark
precisionFDA Truth Challenge V2: Calling variants from short- and long-reads in difficult-to-map regions
2020)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
MuscleAtlasExplorer : a web service for studying gene expression in human skeletal muscle
(
- Contribution to journal › Article
-
Mark
Development and Validation of CRISPR Activator Systems for Overexpression of CB1 Receptors in Neurons
(
- Contribution to journal › Article
-
Mark
A crowdsourced set of curated structural variants for the human genome
(
- Contribution to journal › Article
-
Mark
The mutational landscape of the SCAN‐B real‐world primary breast cancer transcriptome
(
- Contribution to journal › Article
-
Mark
Features of increased malignancy in eosinophilic clear cell renal cell carcinoma
(
- Contribution to journal › Article
-
Mark
Problems in variation interpretation guidelines and in their implementation in computational tools
(
- Contribution to journal › Article
-
Mark
Proliferation and benevolence—A framework for dissecting the mechanisms of microbial virulence and health promotion
(
- Contribution to journal › Article
-
Mark
Guidelines for systematic reporting of sequence alignments
(
- Contribution to journal › Article
-
Mark
The use of molecular methods in studies of avian haemosporidians
2020) p.113-135(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Genomic basis for RNA alterations in cancer
(
- Contribution to journal › Article
- 2019
-
Mark
SMSSVD : SubMatrix Selection Singular Value Decomposition
(
- Contribution to journal › Article
-
Mark
Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer
(
- Contribution to journal › Article
-
Mark
How adaptive plasticity evolves when selected against
(
- Contribution to journal › Article
-
Mark
Uncertainty quantification, propagation and characterization by Bayesian analysis combined with global sensitivity analysis applied to dynamical intracellular pathway models
(
- Contribution to journal › Article
-
Mark
Kinetic models of hematopoietic differentiation
(
- Contribution to journal › Scientific review
-
Mark
Inferred Allelic Variants of Immunoglobulin Receptor Genes : A System for Their Evaluation, Documentation, and Naming
(
- Contribution to journal › Scientific review
-
Mark
RTNduals an R/Bioconductor package for analysis of co-regulation and inference of dual regulons
(
- Contribution to journal › Letter
-
Mark
MPRAscore : robust and non-parametric analysis of massively parallel reporter assays
(
- Contribution to journal › Article
-
Mark
A novel conserved family of Macro-like domains—putative new players in ADP-ribosylation signaling
(
- Contribution to journal › Article
-
Mark
Production and utilisation of prebiotic oligosaccharides : Applied bioinformatics of glycoside hydrolases
2019)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Genomics of host-pathogen interactions : challenges and opportunities across ecological and spatiotemporal scales
2019) In PeerJ Preprints(
- Contribution to journal › Article
-
Mark
A new evolutionary rough fuzzy integrated machine learning technique for microRNA selection using next-generation sequencing data of breast cancer
(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
-
Mark
Decay of connection probabilities with distance in 2D and 3D neuronal networks
(
- Contribution to journal › Article
-
Mark
Amyloid and tau accumulate across distinct spatial networks and are differentially associated with brain connectivity
(
- Contribution to journal › Article
-
Mark
A urinary extracellular vesicle microRNA biomarker discovery pipeline; from automated extracellular vesicle enrichment by acoustic trapping to microRNA sequencing
(
- Contribution to journal › Article
-
Mark
First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study
(
- Contribution to journal › Article
-
Mark
Alpha-1-acid glycoprotein 1 is upregulated in pancreatic ductal adenocarcinoma and confers a poor prognosis
(
- Contribution to journal › Article
-
Mark
SVCurator: A Crowdsourcing app to visualize evidence of structural variants for the human genome
2019)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
Biological interpretations of the biphasic model of ontogenetic brain-body allometry : A reply to Packard
(
- Contribution to journal › Article
- 2018
-
Mark
Pon-tstab : Protein variant stability predictor. importance of training data quality
(
- Contribution to journal › Article
-
Mark
A novel model for protein sequence similarity analysis based on spectral radius
(
- Contribution to journal › Article
-
Mark
Clinical Value of RNA Sequencing–Based Classifiers for Prediction of the Five Conventional Breast Cancer Biomarkers: A Report From the Population-Based Multicenter Sweden Cancerome Analysis Network—Breast Initiative
(
- Contribution to journal › Article
-
Mark
Turning vice into virtue : Using Batch-Effects to Detect Errors in Large Genomic Datasets
(
- Contribution to journal › Article
-
Mark
The interaction of transcription factors controls the spatial layout of plant aerial stem cell niches
(
- Contribution to journal › Article
-
Mark
Nitrate modulates stem cell dynamics in Arabidopsis shoot meristems through cytokinins
2018) In Proceedings of the National Academy of Sciences of the United States of America 115(6). p.1382-1387(
- Contribution to journal › Article
-
Mark
Fenton reaction facilitates organic nitrogen acquisition by an ectomycorrhizal fungus
(
- Contribution to journal › Article
-
Mark
Transcriptomic landscape of the blastema niche in regenerating adult axolotl limbs at single-cell resolution
(
- Contribution to journal › Article
- 2017
-
Mark
Analysis of bacterial surface interactions with mass spectrometry-based proteomics
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Different reprogramming propensities in plants and mammals: Are small variations in the core network wirings responsible?
2017) In PLoS ONE(
- Contribution to journal › Article
-
Mark
GAVIN : Gene-Aware Variant INterpretation for medical sequencing
(
- Contribution to journal › Article
-
Mark
Performance of in silico tools for the evaluation of p16INK4a (CDKN2A) variants in CAGI
(
- Contribution to journal › Article
-
Mark
Does next-generation sequencing of cyst fluid improve management of pancreatic cystic neoplasms?
(
- Contribution to journal › Scientific review
-
Mark
Improvements in Mass Spectrometry Assay Library Generation for Targeted Proteomics
(
- Contribution to journal › Article
-
Mark
Preparation of highly multiplexed small RNA sequencing libraries
(
- Contribution to journal › Article
-
Mark
Bioinformatic approaches to gene expression in leukemia. Networks and deconvolution
2017)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Mitochondria are not captive bacteria
(
- Contribution to journal › Article
-
Mark
Cell-Type-Specific Gene Programs of the Normal Human Nephron Define Kidney Cancer Subtypes
(
- Contribution to journal › Article
-
Mark
Biopython Project Update 2017
2017) 18th Bioinformatics Open Source Conference, 2017(
- Contribution to conference › Other
-
Mark
PON-P and PON-P2 predictor performance in CAGI challenges : Lessons learned
(
- Contribution to journal › Article
-
Mark
Bioconda: A sustainable and comprehensive software distribution for the life sciences
2017)(
- Working paper/Preprint › Preprint in preprint archive
-
Mark
ExCAPE-DB : An integrated large scale dataset facilitating Big Data analysis in chemogenomics
(
- Contribution to journal › Article
- 2016
-
Mark
Selection Shapes Transcriptional Logic and Regulatory Specialization in Genetic Networks.
(
- Contribution to journal › Article
-
Mark
Unifying European Biodiversity Informatics (Bio Unify)
(
- Contribution to journal › Article
-
Mark
A somatic mutation of GFI1B identified in leukemia alters cell fate via a SPI1 (PU.1) centered genetic regulatory network.
(
- Contribution to journal › Article
-
Mark
Human Variome Project Quality Assessment Criteria for Variation Databases.
(
- Contribution to journal › Article
-
Mark
Nanog, Oct4 and Tet1 interplay in establishing pluripotency
(
- Contribution to journal › Article
-
Mark
Biopython Project Update 2016
2016) Bioinformatics Open Source Conference, 2016(
- Contribution to conference › Other
-
Mark
Both Generic and Protein-Specific Tolerance Predictors Are Needed
(
- Contribution to journal › Debate/Note/Editorial
-
Mark
Tools and pipelines for interpreting the impacts of genetic variants
2016)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Irreversibility of t-cell specification : Insights from computational modelling of a minimal network architecture
(
- Contribution to journal › Article
-
Mark
DNA Extraction Protocols for Whole-Genome Sequencing in Marine Organisms
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Variation Interpretation Predictors : Principles, Types, Performance, and Choice
(
- Contribution to journal › Article
-
Mark
Did viruses evolve as a distinct supergroup from common ancestors of cells?
(
- Contribution to journal › Article
- 2015
-
Mark
The canonical equation of adaptive dynamics for life histories: from fitness-returns to selection gradients and Pontryagin's maximum principle.
(
- Contribution to journal › Article
-
Mark
MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics
(
- Contribution to journal › Article
-
Mark
Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project
(
- Contribution to journal › Article
-
Mark
Captured metagenomics: large-scale targeting of genes based on 'sequence capture' reveals functional diversity in soils.
(
- Contribution to journal › Article
-
Mark
Pediobius cajanus sp n. (Hymenoptera, Eulophidae), an important natural enemy of the Asian fly (Melanagromyza obtusa (Malloch)) (Diptera, Agromyzidae) in the Dominican Republic
(
- Contribution to journal › Article
-
Mark
Rough based symmetrical clustering for gene expression profile analysis
(
- Contribution to journal › Article
-
Mark
Phage-displayed antibody libraries
2015) KI-SciLifeLab Workshop on: Next generation sequencing of antibody repertoires(
- Contribution to conference › Abstract
-
Mark
Development of Computational Methods for Cancer Research: Strategies for closing the feedback loop in omics workflows
2015)(
- Thesis › Doctoral thesis (compilation)
-
Mark
Birth-jump processes and application to forest fire spotting
(
- Contribution to journal › Article
- 2014
-
Mark
Rethinking transcriptional activation in the Arabidopsis circadian clock.
(
- Contribution to journal › Article
-
Mark
Identification of core T cell network based on immunome interactome.
(
- Contribution to journal › Article
-
Mark
Stress and strain provide positional and directional cues in development.
(
- Contribution to journal › Article
- 2013
-
Mark
Exploring Protein-Peptide Binding Specificity through Computational Peptide Screening.
(
- Contribution to journal › Article
-
Mark
Processing of Multi-dimensional Sensorimotor Information in the Spinal and Cerebellar Neuronal Circuitry: A New Hypothesis.
(
- Contribution to journal › Article
-
Mark
Transcriptional regulation of lineage commitment - a stochastic model of cell fate decisions.
(
- Contribution to journal › Article
-
Mark
Dynamic Analysis of Gene Expression and Genome-wide Transcription Factor Binding during Lineage Specification of Multipotent Progenitors
(
- Contribution to journal › Article
-
Mark
SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology
(
- Contribution to journal › Article
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2013) US8620592(
- Patent › Patent
- 2012
-
Mark
Analysis of case-control association studies with known risk variants
(
- Contribution to journal › Article
-
Mark
Probing the role of stochasticity in a model of the embryonic stem cell - heterogeneous gene expression and reprogramming efficiency
(
- Contribution to journal › Article
-
Mark
VarioML framework for comprehensive variation data representation and exchange
(
- Contribution to journal › Article
-
Mark
Mechanistic Basis of Branch-Site Selection in Filamentous Bacteria
(
- Contribution to journal › Article
-
Mark
Binding of two intrinsically disordered peptides to a multi-specific protein: a combined Monte Carlo and molecular dynamics study
(
- Contribution to journal › Article
-
Mark
SeqFIRE : a web application for automated extraction of indel regions and conserved blocks from protein multiple sequence alignments
(
- Contribution to journal › Article
-
Mark
Sets of probes and primers for the diagnosis of select cancers
2012) US8263759(
- Patent › Patent
- 2011
-
Mark
Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation.
(
- Contribution to journal › Article
-
Mark
A Computational and Experimental Study of the Regulatory Mechanisms of the Complement System
(
- Contribution to journal › Article
-
Mark
Simulating the Mammalian blastocyst - molecular and mechanical interactions pattern the embryo.
(
- Contribution to journal › Article
-
Mark
Binding Free Energy Landscape of Domain-Peptide Interactions
(
- Contribution to journal › Article
-
Mark
Laboratory data and sample management for proteomics.
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Multiple light inputs to a simple clock circuit allow complex biological rhythms
(
- Contribution to journal › Article
-
Mark
Gene expression of the endolymphatic sac
(
- Contribution to journal › Article
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2011) US8065092(
- Patent › Patent
- 2010
-
Mark
Integrative analysis of gene expression and copy number alterations using canonical correlation analysis
(
- Contribution to journal › Article
-
Mark
Detecting microRNA activity from gene expression data
(
- Contribution to journal › Article
-
Mark
A cell-based model for quorum sensing in heterogeneous bacterial colonies.
(
- Contribution to journal › Article
-
Mark
Quantitative Analysis of Immune Response and Erythropoiesis during Rodent Malarial Infection
(
- Contribution to journal › Article
-
Mark
Selections of genes and methods of using the same for diagnosis and for targeting the therapy of select cancers
2010) US7655397(
- Patent › Patent
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2010) US7774143(
- Patent › Patent
-
Mark
Methods for analyzing high dimensional data for classifying, diagnosing, prognosticating, and/or predicting diseases and other biological states
2010) US7783431(
- Patent › Patent
-
Mark
Direct decomposition of three-way arrays using a non-negative approximation
(
- Contribution to journal › Article
- 2009
-
Mark
Computational Modeling of the Hematopoietic Erythroid-Myeloid Switch Reveals Insights into Cooperativity, Priming, and Irreversibility
(
- Contribution to journal › Article
-
Mark
A module-based analytical strategy to identify novel disease-associated genes shows an inhibitory role for interleukin 7 Receptor in allergic inflammation
(
- Contribution to journal › Article
-
Mark
RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities
(
- Contribution to journal › Article
-
Mark
Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution
(
- Contribution to journal › Article
-
Mark
How to find simple and accurate rules for viral protease cleavage specificities
(
- Contribution to journal › Article
-
Mark
Computational modelling of cancerous mutations in the EGFR/ERK signalling pathway
(
- Contribution to journal › Article
-
Mark
The Proteios Software Environment: an extensible multiuser platform for management and analysis of proteomics data
(
- Contribution to journal › Article
-
Mark
BASE--2nd generation software for microarray data management and analysis.
(
- Contribution to journal › Article
-
Mark
Weather and Seasons Together Demand Complex Biological Clocks
(
- Contribution to journal › Article
- 2008
-
Mark
Formation and Growth of Oligomers: A Monte Carlo Study of an Amyloid Tau Fragment
(
- Contribution to journal › Article
-
Mark
PseudoGeneQuest - service for identification of different pseudogene types in the human genome.
(
- Contribution to journal › Article
-
Mark
Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.
(
- Contribution to journal › Article
- 2007
-
Mark
Continuous-index hidden Markov modelling of array CGH copy number data.
(
- Contribution to journal › Article
-
Mark
Multiple spaced seeds for homology search
(
- Contribution to journal › Article
-
Mark
Robust smooth segmentation approach for array CGH data analysis
(
- Contribution to journal › Article
-
Mark
Regression analysis and modelling of data acquisition for SELDI-TOF mass spectrometry.
(
- Contribution to journal › Article
-
Mark
Classification of genomic and proteomic data using support vector machines
2007) p.187-202(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
SPECLUST: a web tool for clustering of mass spectra
2007) In LU TP 07-14(
- Book/Report › Report
- 2006
-
Mark
Transcriptional dynamics of the embryonic stem cell switch
(
- Contribution to journal › Article
-
Mark
Independent component analysis reveals new and biologically significant structures in micro array data
(
- Contribution to journal › Article
-
Mark
Analysis of promoter regions of co-expressed genes identified by microarray analysis
(
- Contribution to journal › Article
-
Mark
Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method
(
- Contribution to journal › Article
-
Mark
Microarray image analysis: background estimation using quantile and morphological filters
(
- Contribution to journal › Article
-
Mark
2DDB – a bioinformatics solution for analysis of quantitative proteomics data
(
- Contribution to journal › Article
-
Mark
Improving missing value imputation of microarray data by using spot quality weights
(
- Contribution to journal › Article
-
Mark
A statistical score for assessing the quality of multiple sequence alignments.
(
- Contribution to journal › Article
-
Mark
An evaluation of using ensembles of classifiers for predictions based on genomic and proteomic data
2006) In LU TP 06-19(
- Book/Report › Report
- 2005
-
Mark
CoGenT++: an extensive and extensible data environment for computational genomics
(
- Contribution to journal › Article
-
Mark
Folding free energies of 5'-UTRs impact post-transcriptional regulation on a genomic scale in yeast
(
- Contribution to journal › Article
-
Mark
Modeling the organization of the WUSCHEL expression domain in the shoot apical meristem
(
- Contribution to journal › Article
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Mark
PROTEIOS: an open source proteomics initiative
(
- Contribution to journal › Article
-
Mark
Chapter 14 Proteomics and remodeling of extracellular matrix in lung diseases
(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
Dynamic covariation between gene expression and proteome characteristics.
(
- Contribution to journal › Article
-
Mark
Signal transduction pathway profiling of individual tumor samples
(
- Contribution to journal › Article
-
Mark
Method for protein structure alignment
2005) US6859736(
- Patent › Patent
- 2004
-
Mark
Approximate geodesic distances reveal biologically relevant structures in microarray data
(
- Contribution to journal › Article
-
Mark
Modular, scriptable and automated analysis tools for high-throughput peptide mass fingerprinting
(
- Contribution to journal › Article
-
Mark
ACID: a database for microarray clone information
(
- Contribution to journal › Article
-
Mark
Incidence of "quasi-ditags" in catalogs generated by Serial Analysis of Gene Expression (SAGE)
(
- Contribution to journal › Article
-
Mark
galaxieEST: addressing EST identity through automated phylogenetic analysis
(
- Contribution to journal › Article
-
Mark
A strategy for identifying putative causes of gene expression variation in human cancers
(
- Contribution to journal › Article
-
Mark
Calibration and assessment of channel-specific biases in microarray data with extended dynamical range
(
- Contribution to journal › Article
-
Mark
A method for finding putative causes of gene expression variation
(
- Chapter in Book/Report/Conference proceeding › Paper in conference proceeding
-
Mark
Multiclass discovery in array data
(
- Contribution to journal › Article
- 2003
-
Mark
Microarray-based cancer diagnosis with artificial neural networks
(
- Contribution to journal › Scientific review
-
Mark
Probabilistic estimation of microarray data reliability and underlying gene expression
(
- Contribution to journal › Article
-
Mark
Efficient estimation of emission probabilities in profile hidden Markov models.
(
- Contribution to journal › Article
-
Mark
Classification of Expression Patterns Using Artificial Neural Networks
2003) p.201-215(
- Chapter in Book/Report/Conference proceeding › Book chapter
-
Mark
RankViaContact: ranking and visualization of amino acid contacts.
(
- Contribution to journal › Article
- 2002
-
Mark
A novel approach to local reliability of sequence alignments.
(
- Contribution to journal › Article
-
Mark
Analyzing array data using supervised methods
(
- Contribution to journal › Scientific review
- 2001
-
Mark
BioWAP, mobile Internet service for bioinformatics
(
- Contribution to journal › Article
- 2000
-
Mark
A novel approach to structure alignment
2000) In LU TP 00-07(
- Book/Report › Report
- 1999
-
Mark
MUTbase: maintenance and analysis of distributed mutation databases
(
- Contribution to journal › Article
- 1992
-
Mark
Comparison of the complete sequence of the str operon in Salmonella typhimurium and Escherichia coli
(
- Contribution to journal › Article